HCV Database
HCV sequence database

To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


Purpose: This tool generates an image of an alignment using 1 or more colored pixel(s) for each residue, thus allowing errors in large alignments to be easily seen. See Pixel Explanation.

  Advanced   Basic  
icon Paste your alignment
[Sample Input]
or upload your file
Sequence type Auto-detect    Amino acids    DNA   
icon Color scheme Default    JMol 'shapely'    Se-Al   
icon Show differences relative to reference sequence No   Matches gray   Matches white, mismatches red, indels black
icon Reference sequence First sequence    
icon Plot size Automatically compute.  Set residue scale x pixels
Or set dimensions x inches
icon Show sequence names    Font size
icon Show scale bar    Scale bar size
icon Margins inches

Questions or comments? Contact us at hcv-info@lanl.gov