To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.
Please reference these articles when using TreeRate:
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- Maljkovic Berry I, Ribeiro R, Kothari M, Athreya G, Daniels M, Lee HY, Bruno W, Leitner T. Unequal Evolutionary Rates in the Human Immunodeficiency Virus
Type 1 (HIV-1) Pandemic: the Evolutionary Rate of HIV-1 Slows Down When the Epidemic Rate Increases. 2007 J Virol 81:10625-10635.
- Maljkovic Berry I, Athreya G, Kothari M, Daniels M, Bruno W, Korber B, Kuiken C, Ribeiro R, Leitner T. A simple method for optimizing the root in phylogenetic trees with longitudinal data reveals an evolutionary rate that tracks the epidemiological dynamics of HIV-1. 2009 Epidemics 1(4): 230-239.