HCV Database
HCV sequence database

To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.

Tree Rate Dates File Format

This file is used to calculate the evolutionary rate.

Below is an example of such a file. Each line contains the taxon name followed by a SPACE and the time of each taxa (years, months or days in decimal form).

NOTE: Please make sure your dates file is in *plain text format* and the taxa names exactly match those in the Newick file. If not, the evolutionary rates calculated could be erroneous.

A 10
B 10
C 20.5
D 20
E 20


Questions or comments? Contact us at hcv-info@lanl.gov