HCV Database
HCV sequence database

To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


Purpose: Align a desired region to our premade alignments or your own alignment. Details and help files below.

Provide query sequence(s)
Paste your sequence(s) here
[Sample Input]
or upload sequence file
-- OR leave both fields above blank, and --
Choose region coordinates
Sequence coordinates start end
(coordinates on NC_004102)

Query sequence type nucleotide protein let program decide
Delete gaps and shift alignment to C-terminus yes no      (for proteins only)
Display wide output yes no
Calculate frequency by position      cut-off %
Include surrounding region


QuickAlign was formerly offered as the Primalign and Epilign tools.


Related links:

  • Alignments describes the different types of premade alignments available.
  • The Gene Map page provides sequence coordinates for the genes and regions of HCV.
  • Sequence Locator provides additional location information, but does not produce an alignment to database sequences.

Questions or comments? Contact us at hcv-info@lanl.gov