HCV Database
HCV sequence database

To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


Epitope Location Finder

Purpose: search a submitted protein sequence for (1) known epitopes from our immunology databases, (2) epitopes predicted by consensus binding motifs, and (3) epitopes predicted by the IEDB binding algorithm. For details see ELF Explanation.

Paste protein sequence
[Sample Input]
<50 amino acids, raw format
Show known epitopes from CTL and T-Helper databases
Find potential epitopes based on anchor residues
based on IEDB binding predictions  
  Peptide length (class I):    8   9   10   11   12   13   14   15
Show best binder(s) per MHC
Show below percentile rank (1-100) per MHC
MHC(s) Upload
Choose ones from lists below (Use control-click for multiple selection)
By genotype
By serotype
E-mail result IEDB predictions are slow. For more than a few MHCs or petide lengths, we recommend e-mailed result.

Questions or comments? Contact us at hcv-info@lanl.gov