HCV Database
HCV sequence database

To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.

Codon Alignment v2.1.0

Purpose: This tool takes any DNA alignment and returns a codon alignment and translation.

How to use: Any DNA sequence or alignment is accepted. The first sequence in the file will be taken as the master sequence. For details, see Codon Alignment Explanation.

Paste your alignment here
[Sample Input]
or upload your alignment file

Codon-align starting in frame 1 2 3 all Let program decide
Allow # of codons for frameshift compensation

Release Notes: For details on releases click here.

Known Bugs: For known bugs click here.

Wish List: For desired new features click here.

Questions or comments? Contact us at hcv-info@lanl.gov