T Helper Epitope Summary
Download T Helper epitope summary.
This is a list of all HCV T Helper epitopes mapped to within a region of 21 amino acids or less. The protein, H77 location, host species and HLA restriction elements of the T Helper epitopes are provided. Identical entries are shown only once. The epitope sequence is a link to the database which will provide details of all epitopes containing that sequence.
Epitope | Protein | H77 Location | Species | HLA |
---|---|---|---|---|
MSTNPKPQIKTKRNTNRR |
Core | 1-18 | human | DR |
MSTNPKPQRKTKRNTNRRQD |
Core | 1-20 | human | |
DVKFPGGGQIVGGVYLLPRR |
Core | 21-40 | human | |
DVKFPGGGQIVGGVYLLPRR |
Core | 21-40 | human | DRB1*1101, DQB1*0301 |
VGGVYLLPRRGPRLG |
Core | 31-45 | human | |
VGGVYLLPRR GPRLG ? |
Core | 31-45 | human | DR11 |
VGGVYLLPRRGPRLGVRATR |
Core | 31-50 | human | |
RRRSRNLGKVIDTLT |
Core | 113-127 | human | |
KVIDTLTCGFADLMGYIPLV |
Core | 121-140 | mouse | H-2r, H-2b, H-2d |
TLTCGFADLMGYIPL |
Core | 125-139 | human | |
GAPLGGAARA LAHGV ? |
Core | 141-155 | human | DR11, DR12 |
GAPLGGAARALAHGVRVLED |
Core | 141-160 | human | |
APLGGAARALAHGVR |
Core | 142-156 | human | |
SFSIFLLALLSCLTI |
Core | 173-187 | human | |
LLSCLTIPASA |
Core | 181-191 | human | |
HVTNDCPNSSIVYEA |
E1 | 202-216 | human | |
CPNSSIVYEAHDAIL |
E1 | 207-221 | human | |
SRCWVALTPTLAARN |
E1 | 236-250 | human | |
RCWVAMTPTVATRDG |
E1 | 237-251 | human | |
MTPTVATRDGKLPAT |
E1 | 242-256 | human | |
KLPATQLRRHIDLLV |
E1 | 252-266 | human | |
TIRRHVDLLVGAAAF |
E1 | 257-271 | human | |
GSATLCSALYVGDLC |
E1 | 267-281 | human | |
GSVFLIGQLFTFSPR |
E1 | 282-296 | human | |
TFSPRRHQTVQDCNC |
E1 | 292-306 | human | |
SIYPGHITGHRMAWD |
E1 | 307-321 | human | |
HITGHRMAWDMMMNW |
E1 | 312-326 | human | |
HVSGHRMAWDMMMNW |
E1 | 312-326 | human | |
HVSGHRMAWDMMMNWA |
E1 | 312-327 | mouse | |
MMMNWSPTAALVMAQ |
E1 | 322-336 | human | |
SPTAALVVSQLLRIP |
E1 | 327-341 | human | |
QAILDMIAGAHWGVL |
E1 | 342-356 | human | |
HWGVLAGLAYYSMVG |
E1 | 352-366 | human | |
FSMVGNWAKVLVVLL |
E1 | 362-376 | human | |
NWAKVLVVLLLFAGV |
E1 | 367-381 | human | |
GFATQRLTSLFALGPSQK |
E2 | 393-410 | human | DRB1*1101 |
CLWMMLLIAQAEQALL |
E2 | 734-749 | human | |
AMDREMAASCGGAVF |
NS2 | 809-823 | human | |
RDAIILLTCAVHPEL |
NS2 | 870-884 | human | |
GPLMVLQAGIIRAPY |
NS2 | 897-911 | human | |
PVSARRGREILLGPADGMVS |
NS2 | 1001-1020 | human | |
GQGWRLLAPITAYSQ |
NS3 | 1020-1034 | human | |
GPVIQMYTNVDQDLV ? |
NS3 | 1095-1109 | human | |
QGSRSLTPCTCGSSD ? |
NS3 | 1115-1129 | human | |
SSDLYLVTRHADVIP ? |
NS3 | 1127-1141 | human | |
YLVTRHADVIPVRRRGDSRG |
NS3 | 1131-1150 | human | |
SLLSPRPISYLKGSS ? |
NS3 | 1151-1165 | human | |
CPAGHAVGIFRAAVC ? |
NS3 | 1171-1185 | human | |
GHAVGLFRAAVCTRGVTK |
NS3 | 1174-1191 | transgenic mouse | DR4 |
LETTMRSPVFTDNSSPPVVP |
NS3 | 1201-1220 | human | |
LETTMRSPVFTDNSSPPVVP |
NS3 | 1201-1220 | DR11 | |
SPVFTDNSSP PAVPQ ? |
NS3 | 1207-1221 | human | DR11 |
VPQSFQVAHLHAPTG ? |
NS3 | 1219-1233 | human | |
FQVAHLHAPTGSGKS ? |
NS3 | 1223-1237 | human | |
KVPAAYAAQGYKVLV ? |
NS3 | 1239-1253 | human | |
PAAYAAQGYKVLVLNPSVAA |
NS3 | 1241-1260 | human | |
PAAYAAQGYKVLVLNPSVAA |
NS3 | 1241-1260 | DR11/DQ3 + DR4/10,DQ1/3 | |
YAAQGYKV |
NS3 | 1244-1251 | transgenic mouse | DR4 |
AAKGYKVLVL NPSVA ? |
NS3 | 1245-1259 | human | DR11 |
AQGYKVLVLNPSVAA |
NS3 | 1246-1260 | human | |
QGYKVLVLNPSVAA |
NS3 | 1247-1260 | DR3/DR11 | |
QGYKVLVLNPSVAAT ? |
NS3 | 1247-1261 | human | |
GYKVLVLNPSV |
NS3 | 1248-1258 | chimpanzee | Patr-DRB1*1001 |
GYKVLVLNPSVAAT |
NS3 | 1248-1261 | human | DR |
GYKVLVLNPSVAAT |
NS3 | 1248-1261 | human | DR4 |
GYKVLVLNPSVAAT |
NS3 | 1248-1261 | human | DRB1*1101,DRB1*1201,DRB1*0401,DRB1*1302,DRB1*1601 |
GYKVLVLNPSVAATL |
NS3 | 1248-1262 | DRB1*0401 | |
GYKVLVLNPSVAATLGFG |
NS3 | 1248-1265 | human | |
GYKVLVLNPSVAATLGFGAY |
NS3 | 1248-1267 | human | DQB1*0301 |
GYKVLVLNPSVAATLGFGAY |
NS3 | 1248-1267 | DQB1*0301 | |
VLVLNPSVA |
NS3 | 1251-1259 | human | DR |
VLVLNPSVA |
NS3 | 1251-1259 | human | DRB1*1101,DRB1*1201,DRB1*0401,DRB1*1302,DRB1*1601 |
VLVLNPSVAA |
NS3 | 1251-1260 | DRB1*1101, DRB1*0401, DRB1*1201, DRB1*1302, DRB1*1601 | |
LVLNPSVAAT |
NS3 | 1252-1261 | transgenic mouse | DR4 |
LGFGAYM |
NS3 | 1262-1268 | transgenic mouse | DR4 |
GVRTITTGSPITYSTYGKFL |
NS3 | 1281-1300 | DR4/DR8 | |
ITYSTYGKFLADGGCSGGAY |
NS3 | 1291-1310 | human | |
TYGKFLADGGCSGGAY |
NS3 | 1291-1310 | DR3/DR11 | |
ITYSTYGKFLADGGCSGGAY |
NS3 | 1291-1310 | DR4/DR10 | |
YSTYGKFLADAGCSGGAY ? |
NS3 | 1293-1310 | human | |
TYGKFLADGGCSGGA ? |
NS3 | 1295-1309 | human | |
LADAGCSGGAYDIIICDE ? |
NS3 | 1300-1317 | human | |
LADAGCSGGAYDIIICDE |
NS3 | 1300-1317 | human | DR |
GGAYDIIICDECHST ? |
NS3 | 1307-1321 | human | |
DIIICDECHSTDATS ? |
NS3 | 1311-1325 | human | |
TDATSILGIGTVLDQAETAG |
NS3 | 1321-1340 | human | |
TDATSILGIGTVLDQAETAG |
NS3 | 1321-1340 | DR4/DR8 | |
ATSILGIGTVLDQAE ? |
NS3 | 1323-1337 | human | |
ATSILGIGTVLDQAET |
NS3 | 1323-1338 | DR3/DR4 | |
YGKAIPLEVI |
NS3 | 1376-1385 | chimpanzee | Patr-DRB5*0310 |
VIKGGRHLIFCHSKKKCD |
NS3 | 1384-1401 | human | |
VIKGGRHLIFCHSKKKCD |
NS3 | 1384-1401 | human | DR15 |
VIKGGRHLIFCHSKKKCD |
NS3 | 1384-1401 | human | DRB1*15 |
VIKGGRHLIFCHSKKKCD ? |
NS3 | 1384-1401 | human | DRB1*15 |
VIKGGRHLIFCHSKKKCD |
NS3 | 1384-1401 | DRB1*1501/DRB5*0501 | |
VIKGGRHLIFCHSKKKCD |
NS3 | 1384-1401 | human | HLA-DR15 |
VIKGGRHLIFCHSHHHCD |
NS3 | 1384-1401 | human | HLA-DRB1*15 |
GGRHLIFCHSKKKC |
NS3 | 1387-1400 | DR1/15 + DR8/15 + DR1/15 + DR15/7 | |
GGRHLIFCHSKKKCD ? |
NS3 | 1387-1401 | human | |
GRHLIFCHSK |
NS3 | 1388-1397 | human | DRB1*1501/DRB5*0501 |
GRHLIFCHSKR |
NS3 | 1388-1398 | human | DRB1*1502/DRB1*1104 |
KCDELAAKLVALGIN ? |
NS3 | 1399-1413 | human | |
LAAKLVALGINAVAY ? |
NS3 | 1403-1417 | human | |
GINAVAYYRGLDVSV ? |
NS3 | 1411-1425 | human | |
GINAVAYYRGLDVSVI |
NS3 | 1411-1426 | DR1/DR15 | |
GINAVAYYRGLDVSVIPTSG |
NS3 | 1411-1430 | human | |
GINAVAYYRGLDVSVIPTSG |
NS3 | 1411-1430 | DR4/DR10 | |
VAYYRGLDVSV |
NS3 | 1415-1425 | human | DRB1*1501 |
VAYYRGLDVSVIPTS ? |
NS3 | 1415-1429 | human | |
VAYYRGLDVSVIPTSG |
NS3 | 1415-1430 | DR8/DR15 | |
IPTNGDVVVVSTDALMTG |
NS3 | 1426-1443 | human | |
ALMTGYTGDFDSVID ? |
NS3 | 1439-1453 | human | |
DFDSVIDCNTCVTQTVDF |
NS3 | 1447-1464 | human | |
DFDSVIDCNTCVTQTVDF ? |
NS3 | 1447-1464 | human | |
DFDSVIDCNTCVTQTVDF |
NS3 | 1447-1464 | ||
SVIDCNTCVTQTVDFSLDPT |
NS3 | 1450-1469 | DRB1*1302 | |
VIDCNTCVTQTVDFS ? |
NS3 | 1451-1465 | human | |
CNTCVTQTVDFSLDPTFT |
NS3 | 1454-1471 | ||
YDAGCAWYELTPAETTVRLR |
NS3 | 1454-1471 | DR4/DR10 | |
NTCVTQTVDFSLDPT ? |
NS3 | 1455-1469 | human | |
TQTVDFSLDPTFTIE ? |
NS3 | 1459-1473 | human | |
EQYVDFSLDPTFSIE |
NS3 | 1459-1473 | human | |
PTFTIETTTLPQDAVSRT ? |
NS3 | 1468-1485 | human | |
MFDSSVLCECYDAGC |
NS3 | 1511-1525 | human | |
YDAGCAWYELTPAETTVRLR |
NS3 | 1521-1540 | human | |
MPAETTVRLRAYMNTPG |
NS3 | 1531-1547 | human | |
MPAETTVRLRAYMNTPG |
NS3 | 1531-1547 | human | HLA-DR |
TPAETTVRLRAYMNTPGLPV |
NS3 | 1531-1550 | human | |
TPAETTVRLRAYMNTPGLPV |
NS3 | 1531-1550 | DR4/DR8 | |
TTVRLRAYMNTPGLP ? |
NS3 | 1535-1549 | human | |
LRAYMNTPGLPV |
NS3 | 1539-1550 | human | DRB1*1502/DRB1*1104 |
LRAYMNTPGLPVCQD ? |
NS3 | 1539-1553 | human | |
LRAYMNTPGLPVCQDH |
NS3 | 1539-1554 | DR1/DR15 | |
RAYMNTPGLPV |
NS3 | 1540-1550 | human | DRB1*0701 |
AYMNTPGLPV |
NS3 | 1541-1550 | human | DRB1*0101/DRB1*0701 |
ESVFTGLTHIDAHFL |
NS3 | 1559-1573 | human | |
TGLTHIDAHFLSQTK ? |
NS3 | 1563-1577 | human | |
SGENLPYLVAYQATVCARA |
NS3 | 1579-1597 | DRB1*0401 | |
ENLPYLVAYQATVCARAQAP |
NS3 | 1581-1600 | human | |
ENLPYLVAYQATVCARAQAP |
NS3 | 1581-1600 | DR4/DR10, DR4/DR8 | |
LPYLVAYQATVCARA ? |
NS3 | 1583-1597 | human | |
NLPYLVAYQATVCA |
NS3 | 1585-1594 | human | DRB1*0101/DRB1*0701 |
YLVAYQATVC |
NS3 | 1585-1594 | human | DRB1*0301/DRB1*1501 |
YLVAYQATVCA |
NS3 | 1585-1595 | human | DRB1*1501 |
VAYQATVCARA |
NS3 | 1587-1597 | transgenic mouse | DR4 |
VAYQATVCARAQAPP ? |
NS3 | 1587-1601 | human | |
TAYQATVCARAQAPP |
NS3 | 1587-1601 | human | |
AQAPPPSWDQMWKCL ? |
NS3 | 1597-1611 | human | |
AQAPPPSWDQMWKCLI |
NS3 | 1597-1612 | DR8/DR15 | |
PPSWDQMWKCLIRLKPTLHG |
NS3 | 1601-1620 | DR4/DR8 | |
DQMWLKCLIRLKPTLH |
NS3 | 1605-1619 | human | |
TLHGPTPLLYRLGAVQNEIT |
NS3 | 1617-1636 | DRB1*0407/DRB1*1104, DRB1*0801 | |
PTPLLYRLGAVQNEITLTHP |
NS3 | 1621-1640 | human | |
PTPLLYRLGAVQNEITLTHP |
NS3 | 1621-1640 | DR4/DR10 | |
PVTKYIMACSADLES |
NS3 | 1640-1655 | human | |
PITKYIMTCMSADLEVVT ? |
NS3 | 1640-1657 | human | |
TSTWVLVGGVLAALA |
NS3 | 1657-1671 | human | |
NFISGIQYLAGLSTLPGNPA |
NS4 | 1767-1786 | human | |
LMAFTAAVTS |
NS4 | 1790-1799 | chimpanzee | Patr-DRB1*0701 |
TSTWVLVGGVLAA |
NS4a | 1657-1669 | human | DRB1*0101/DRB1*0701 |
STWVLVGGVLAALAA |
NS4a | 1658-1672 | human | |
TWVLVGGVLA |
NS4a | 1659-1668 | human | DRB1*0101/DRB1*1301 |
AAYCLSTGCVVIVGRVVLSG |
NS4a | 1671-1690 | human | |
VVLSGKPAIIPDREVLYREF |
NS4a | 1686-1705 | human | DRB1*0301 |
GKPAIIPDREVLYRE |
NS4a | 1690-1704 | human | DRB1*0301 |
IIPDREVLYR |
NS4a | 1694-1703 | human | DRB1*0301/DRB1*1501 |
IAPAVQTNWQKLETFWAKHM |
NS4b | 1746-1765 | human | DRB1*16 or DRB3*0202 |
NFISGIQYLAGLSTLPGNPA |
NS4b | 1767-1786 | human | DRB1*1104 |
GIQYLAGLSTLPGNPAIASL |
NS4b | 1771-1790 | human | |
QYLAGLSTLPG |
NS4b | 1773-1783 | human | DRB1*1104 |
YLAGLSTLPG |
NS4b | 1774-1783 | human | DRB1*1502/DRB1*1104 |
LAGLSTLPGNPAIASLMAFT |
NS4b | 1775-1794 | human | DRB1*0402/DRB1*1101 |
GLSTLPGNPAIASLMAFT |
NS4b | 1777-1794 | human | DR |
LPGNPAIASLMAFTAAVTSP |
NS4b | 1781-1800 | human | |
PAIASLMAFTA |
NS4b | 1785-1795 | human | DRB1*1502/DRB1*1104 |
IASLMAFTAA |
NS4b | 1787-1796 | human | DRB1*0102 |
LTTSQTLLFNILGGWVAAQL |
NS4b | 1801-1820 | human | |
TQHTLLFNILGGWVA |
NS4b | 1803-1817 | human | |
LFNILGGWVA |
NS4b | 1808-1817 | human | DRB1*0101, DRB1*0102 |
FNILGGWVA |
NS4b | 1809-1817 | human | DRB1*0101/DRB1*0701 |
FNILGGWVAAQL |
NS4b | 1809-1820 | human | DRB1*0101/DRB1*1301 |
AATAFVGAGLAGAAI |
NS4b | 1825-1839 | chimpanzee | Patr-DRB1*1001 |
LGKVLVDILAGYGAG |
NS4b | 1844-1858 | human | |
IMSGEVPSTEDLVNLLPA |
NS4b | 1868-1885 | human | DR |
GEVPSTEDLVNLLPAILSPG |
NS4b | 1871-1890 | human | |
LVNLLPAILS |
NS4b | 1879-1888 | human | DRB1*0101 |
NLLPAIL |
NS4b | 1881-1887 | human | DRB1*0101, DRB1*0701 |
ALVVGVVCAAILRRHVGPGE |
NS4b | 1891-1910 | human | |
GPGEGAVQWMNRLIAFASRG |
NS4b | 1907-1926 | human | DRB1*1104, DQB1*0501 |
EGAVQWMNRLIAFAS |
NS4b | 1910-1924 | human | |
GAVQWMNRLIAFASRGNHVS |
NS4b | 1911-1930 | human | |
NRLIAFASRGNHVSPTHY |
NS4b | 1917-1934 | human | DR |
TFALWRVSAEEY |
NS5a | 2079-2090 | chimpanzee | Patr-DRB1*0701 |
ALWRVSAEEY |
NS5a | 2079-2090 | chimpanzee | Patr-DRB1*0701 |
EEYVEIRQVGDFH |
NS5a | 2088-2100 | chimpanzee | Patr-DQ |
SQLSARSLKATCTANHDS |
NS5a | 2204-2221 | human | DR |
IEANLLWRQEMGGNI |
NS5a | 2227-2241 | human | |
VSVPAEILRK SRRFA ? |
NS5a | 2268-2282 | human | DR11 |
VSVPAEILRK SRRFA ? |
NS5a | 2270-2284 | human | DR11 |
PAELRKSRFAQALPVWAR |
NS5a | 2271-2290 | human | |
SPPVPPPRKKRTWLTESTL |
NS5a | 2321-2340 | chimpanzee | Patr-DP |
WTGALVTPCAAEEQK |
NS5b | 2426-2440 | chimpanzee | Patr-DP |
LRHHNLVYSTTSRSACQRQK |
NS5b | 2451-2470 | human | |
KVTFDRLQVLDSHYQDVLKE |
NS5b | 2471-2490 | human | |
SVWKDLLEDNVTPIDTTIMA |
NS5b | 2541-2560 | human | |
KGGRKPARLIVFPDLGVRVC |
NS5b | 2571-2590 | human | |
KPARLIVFPDLGVRVCEK |
NS5b | 2575-2592 | human | DR |
KPARLIVFPDLGVRVCEK |
NS5b | 2575-2592 | human | HLA-DR |
KLPLAVMGSSYGFQYSPGQR |
NS5b | 2601-2620 | human | |
VEFLVQAWKSKKTPMGFSYD |
NS5b | 2621-2640 | human | |
SDIRTEEAIYQCCDLDPQAR |
NS5b | 2651-2670 | human | |
QCCDLDPQARVAIKSLTERL |
NS5b | 2661-2680 | human | |
GYRRCRASGVLT |
NS5b | 2695-2706 | human | |
CSSNVSVAHDGAGK |
NS5b | 2786-2799 | human | |
SVAHDGAGKRVYYLTRDPTT |
NS5b | 2791-2810 | human | |
RDPTTPLARAAWETA ? |
NS5b | 2806-2820 | human | |
NIIMFAPTLWARMILMTHFF |
NS5b | 2831-2850 | human | |
ARMILMTHFFSVLIARDQLE |
NS5b | 2841-2860 | human | |
LMIHFFSILAQEQLE |
NS5b | 2845-2860 | human | |
INRVAACLRKLGVPPLRAW |
NS5b | 2901-2920 | human | |
CGKYLFNWAV RTKLK ? |
NS5b | 2941-2955 | human | DR11 |
CGKYLFNWAVRTKLKLTPIA |
NS5b | 2941-2960 | human |