HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


Models Included in FindModel

Reduced set:

JC : Jukes-Cantor (model 1)
JC+G : Jukes-Cantor plus Gamma (model 3)
F81 : Felsenstein 1981 (model 5)
F81+G : Felsenstein 1981 plus Gamma (model 7)
K80 : Kimura 2-parameter (model 9)
K80+G : Kimura 2-parameter plus Gamma (model 11)
HKY : Hasegawa-Kishino-Yano (model 13)
HKY+G : Hasegawa-Kishino-Yano plus Gamma (model 15)
TrN : Tamura-Nei (model 21)
TrN+G : Tamura-Nei plus Gamma (model 23)
GTR : General Time Reversible (model 53)
GTR+G : General Time Reversible plus Gamma (model 55)

 

Full set:

JC : Jukes-Cantor (model 1)
JC+G : Jukes-Cantor plus Gamma (model 3)
F81 : Felsenstein 1981 (model 5)
F81+G : Felsenstein 1981 plus Gamma (model 7)
K80 : Kimura 2-parameter (model 9)
K80+G : Kimura 2-parameter plus Gamma (model 11)
HKY : Hasegawa-Kishino-Yano (model 13)
HKY+G : Hasegawa-Kishino-Yano plus Gamma (model 15)
TrNef : equal-frequency Tamura-Nei (model 17)
TrNef+G : equal-frequency Tamura-Nei plus Gamma (model 19)
TrN : Tamura-Nei (model 21)
TrN+G : Tamura-Nei plus Gamma (model 23)
K81 : Kimura 3-parameter (model 25)
K81+G : Kimura 3-parameter plus Gamma (model 27)
K81uf : unequal-frequency Kimura 3-parameter (model 29)
K81uf+G : unequal-frequency Kimura 3-parameter plus Gamma (model 31)
TIMef : equal-frequency Transition Model (model 33)
TIMef+G : equal-frequency Transition Model plus Gamma (model 35)
TIM : Transition Model (model 37)
TIM+G : Transition Model plus Gamma (model 39)
TVMef : equal-frequency Transversion Model (model 41)
TVMef+G : equal-frequency Transversion Model plus Gamma (model 43)
TVM : Transversion Model (model 45)
TVM+G : Transversion Model plus Gamma (model 47)
SYM : Symmetrical Model (model 49)
SYM+G : Symmetrical Model plus Gamma (model 51)
GTR : General Time Reversible (model 53)
GTR+G : General Time Reversible plus Gamma (model 55)

 




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