HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


Protein Feature Accent

Purpose:   To view 3D structures of HIV proteins and to map a desired sequence (e.g., short functional domain or epitope) directly onto the interactive graphic.

How to use:   Click on one of the structures listed, or upload a structure file in PDB format. Uploading a sequence is not required. Any sequences you do provide will be analyzed for entropy and glycosylation, aligned with the structure sequence, and displayed. For details, see Protein Feature Accent Explanation. This tool requires that Java be installed on your computer.

Click here for a list of all the HCV structures available.

This is a beta version!
Some capabilities are not fully implemented, and there may be bugs or other problems. Please use with care and a sense of humor.

Select a protein structure:
[switch to full structure list]
OR
upload a PDB file:
You may provide an amino acid sequence alignment (or a single unaligned sequence) below:
Paste your sequence(s) here
or upload a sequence file:

References:

Contributors:

Tool Development Sponsored In Part By:

Comprehensive Antibody-Vaccine Immune Monitoring Consortium


Questions or comments? Contact us at hcv-info@lanl.gov