HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


PeptGen Peptide Generator

Purpose: To generate sets of overlapping peptides that can be used for peptide design and epitope mapping.

How to use: Paste or upload amino acid sequence(s) in any valid sequence format. Change the default values for the other parameters as needed. You may want to use an HCV consensus sequence as input. For additional details, see PeptGen Explanation.

Input
Paste your input here

[SAMPLE INPUT]
or upload your file
If you are submitting an alignment check this box

Options
Make peptides of length C-terminal forbidden amino acids *
Overlap peptides by N-terminal forbidden amino acids *
Shorten by Apply proline rule * Yes No
Lengthen by Calculate hydropathy * Yes No
    Color amino acids Yes No
* For the first sequence only in alignment input

Output
Output style Stairstepping aligned
Simple
Simple style classic new
Duplicate peptides * flag remove
Gaps remove save
* Duplicity within a peptide block



Questions or comments? Contact us at hcv-info@lanl.gov