HCV Database
HCV sequence database

To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


Highlighter for Nucleotide Sequences v2.2.3

Purpose: This tool highlights matches, mismatches, transition and transversion mutations, and silent and non-silent mutations in a set of nucleotide sequences that are aligned and in frame. It is particularly useful for allowing visualization of potential recombination and hypermutation in closely related sequences, such as those isolated from a single patient.

Highlighter for Amino Acid Sequences v2.3.4

Purpose: This tool highlights matches and mismatches in a set of amino acid sequences that are aligned and in frame.

NOTE: The display of nucleotide sequences mutations is handled by our internal program called xyplot whereas the display of amino acid mutations is handled by PostScript. The final version of this software will use Gnuplot for both, nucleotide and amino acid sequences.

Release Notes: For details on releases click here.

Known Bugs: For known bugs click here.

Wish List: For desired new features click here.

Questions or comments? Contact us at hcv-info@lanl.gov