HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	63						
#k	The	average	behavior	for	15	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hq
	1	0	0.6	0	0	0.6	0	A	0.551	0.254	0	0
	2	0	1.53	0.53	0	0.93	0.53	L	0.544	0.287	0.451	-0.451
	3	0	1.53	0.53	0	0	0	E	0.504	0.347	0	0
	4	0	1.78	1.69	0	0.25	1.15	N	0.564	0.347	0.637	-0.637
	5	0	2.58	2.02	0	0.8	0.33	V	0.626	0.232	0.451	-0.451
	6	0	3.18	2.55	0	0.6	0.53	I	0.606	0.286	0.637	-0.637
	7	0	3.71	2.55	0	0.53	0	V	0.599	0.326	0	0
	8	0	4.05	2.55	0	0.33	0	L	0.589	0.483	0	0
	9	0	4.65	2.55	0	0.6	0	N	0.643	0.483	0	0
	10	0	5.51	2.55	0	0.87	0	A	0.583	0.516	0	0
	11	0	6.05	2.89	0	0.53	0.33	A	0.552	0.707	0.451	-0.451
	12	0	6.58	4.02	0	0.53	1.13	S	0.499	0.761	0	0
	13	0	7.18	4.02	0	0.6	0	A	0.487	0.807	0	0
	14	0	8.05	4.02	0	0.87	0	A	0.507	0.86	0	0
	15	0	8.65	4.89	0	0.6	0.87	S	0.473	0.94	1.011	-1.011
	16	0	9.18	5.82	0	0.53	0.93	C	0.446	0.853	1.011	-1.011
	17	0	9.61	7.39	0	0.43	1.57	Q	0.426	0.853	1.011	-1.011
	18	0	10.48	7.39	0	0.87	0	G	0.443	0.696	0	0
	19	0	10.48	7.72	0	0	0.33	L	0.4	0.792	0.451	-0.451
	20	0	11.03	9.63	0	0.56	1.91	L	0.473	0.812	1.792	-1.792
	21	0	11.03	10.5	0	0	0.87	W	0.417	0.621	0.868	-0.868
	22	0	11.45	12.09	0	0.41	1.59	G	0.47	0.587	1.561	-1.561
	23	0	12.25	12.62	0	0.8	0.53	L	0.456	0.508	0.637	-0.637
	24	0	12.78	13.42	0	0.53	0.8	I	0.459	0.565	1.099	-1.099
	25	0	13.11	13.42	0	0.33	0	F	0.486	0.485	0	0
	26	0	13.45	14.35	0	0.33	0.93	I	0.54	0.505	1.011	-1.011
	27	0	14.05	14.35	0	0.6	0	C	0.507	0.519	0	0
	28	0	14.49	15.31	0	0.44	0.96	C	0.5	0.552	0.868	-0.868
	29	0	15.22	15.84	0	0.73	0.53	A	0.529	0.456	0.637	-0.637
	30	0	15.22	15.84	0	0	0	W	0.536	0.516	0	0
	31	0	15.76	16.38	0	0.53	0.53	H	0.589	0.669	0.637	-0.637
	32	0	16.02	17.18	0	0.27	0.8	V	0.596	0.616	0.637	-0.637
	33	0	16.86	18.28	0	0.83	1.1	R	0.622	0.536	0.693	-0.693
	34	0	17.66	18.28	0	0.8	0	G	0.6	0.552	0	0
	35	0	18.52	18.48	0	0.87	0.2	R	0.578	0.694	0	0
	36	0	18.52	19.54	0	0	1.07	A	0.598	0.701	1.099	-1.099
	37	0	19.06	19.88	0	0.53	0.33	V	0.644	0.762	0.451	-0.451
	38	0	19.79	19.88	0	0.73	0	P	0.658	0.809	0	0
	39	0	20.59	21.01	0	0.8	1.13	V	0.585	0.809	1.242	-1.242
	40	0	21.12	22.54	0	0.53	1.53	T	0.578	0.696	1.33	-1.33
	41	0	21.72	22.54	0	0.6	0	T	0.598	0.576	0	0
	42	0	22.26	22.54	0	0.53	0	Y	0.638	0.596	0	0
	43	0	22.87	23.8	0	0.61	1.26	A	0.685	0.609	1.242	-1.242
	44	0	23.45	25.22	0	0.58	1.42	L	0.701	0.58	1.099	-1.099
	45	0	24.51	25.49	0	1.07	0.27	L	0.723	0.498	0	0
	46	0	24.97	27.16	0	0.46	1.68	Q	0.729	0.471	1.33	-1.33
	47	0	25.64	27.96	0	0.67	0.8	L	0.748	0.378	0.637	-0.637
	48	0	25.64	27.96	0	0	0	W	0.794	0.298	0	0
	49	0	26.37	27.96	0	0.73	0	P	0.827	0.298	0	0
	50	0	27.1	28.3	0	0.73	0.33	L	0.811	0.401	0.451	-0.451
	51	0	28.1	28.5	0	1	0.2	L	0.825	0.368	0	0
	52	0	29.1	28.63	0	1	0.13	L	0.798	0.348	0	0
	53	0	29.87	29.6	0	0.77	0.97	L	0.758	0.335	0.868	-0.868
	54	0	30.67	30.2	0	0.8	0.6	I	0.741	0.238	0.693	-0.693
	55	0	31.8	30.2	0	1.13	0	L	0.734444444	0.197777778	0	0
	56	0	32.45	30.95	0	0.65	0.75	A	0.685	0.2225	0.451	-0.451
	57	0	33.58	30.95	0	1.13	0	L	0.69	0.147142857	0	0
	58	0	33.91	30.95	0	0.33	0	P	0.616666667	0.171666667	0	0
	59	0	34.48	31.99	0	0.57	1.03	R	0.674	0.206	1.33	-1.33
	60	0	35.35	31.99	0	0.87	0	R	0.7	0	0	0
	61	0	36.08	31.99	0	0.73	0	A	0.643333333	0	0	0
	62	0	36.68	31.99	0	0.6	0	Y	0.6	0	0	0
	63	0	37.28	31.99	0	0.6	0	A	0.6	0	0	0



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