HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	63						
#k	The	average	behavior	for	15	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10 	avg nonsyn 10	entropy	Hb
	1	0	0.6	0	0	0.6	0	A	0.281	0.238	0	0
	2	0	0.6	0.33	0	0	0.33	M	0.221	0.298	0.451	-0.451
	3	0	0.6	0.33	0	0	0	E	0.281	0.358	0	0
	4	0	0.93	0.33	0	0.33	0	N	0.314	0.358	0	0
	5	0	1.67	0.73	0	0.73	0.4	L	0.361	0.358	0	0
	6	0	2.23	1.1	0	0.57	0.37	V	0.361	0.318	0.451	-0.451
	7	0	2.49	2.05	0	0.25	0.95	M	0.304	0.348	0.868	-0.868
	8	0	2.49	2.05	0	0	0	L	0.319	0.286	0	0
	9	0	2.49	2.38	0	0	0.33	N	0.379	0.286	0.451	-0.451
	10	0	2.82	2.38	0	0.33	0	A	0.379	0.32	0	0
	11	0	2.82	2.98	0	0	0.6	L	0.363	0.403	0.868	-0.868
	12	0	3.42	3.91	0	0.6	0.93	S	0.363	0.343	0.637	-0.637
	13	0	3.75	3.91	0	0.33	0	A	0.303	0.283	0	0
	14	0	4.55	3.91	0	0.8	0	A	0.303	0.283	0	0
	15	0	5.29	3.91	0	0.73	0	G	0.296	0.283	0	0
	16	0	5.29	4.58	0	0	0.67	Q	0.296	0.283	0.451	-0.451
	17	0	5.69	4.91	0	0.4	0.33	Q	0.329	0.216	0.451	-0.451
	18	0	6.29	4.91	0	0.6	0	G	0.322	0.183	0	0
	19	0	6.29	5.58	0	0	0.67	Y	0.322	0.216	0.451	-0.451
	20	0	6.45	6.41	0	0.17	0.83	V	0.382	0.149	0.868	-0.868
	21	0	6.45	6.41	0	0	0	W	0.365	0.066	0	0
	22	0	6.45	6.75	0	0	0.33	Y	0.365	0.126	0.451	-0.451
	23	0	6.79	6.75	0	0.33	0	L	0.412	0.14	0	0
	24	0	7.52	6.75	0	0.73	0	V	0.379	0.14	0	0
	25	0	8.25	6.75	0	0.73	0	A	0.379	0.14	0	0
	26	0	8.59	6.75	0	0.33	0	F	0.359	0.173	0	0
	27	0	8.92	6.75	0	0.33	0	C	0.409	0.236	0	0
	28	0	9.52	7.08	0	0.6	0.33	A	0.409	0.269	0.451	-0.451
	29	0	10.12	7.08	0	0.6	0	A	0.382	0.236	0	0
	30	0	10.12	7.08	0	0	0	W	0.339	0.313	0	0
	31	0	10.12	7.68	0	0	0.6	H	0.357	0.395	0.693	-0.693
	32	0	10.59	8.15	0	0.47	0.47	I	0.385	0.407	0.451	-0.451
	33	0	10.59	8.15	0	0	0	R	0.371	0.36	0	0
	34	0	11.32	8.15	0	0.73	0	G	0.424	0.393	0	0
	35	0	11.85	8.48	0	0.53	0.33	K	0.391	0.446	0.451	-0.451
	36	0	12.69	9.11	0	0.83	0.63	L	0.393	0.484	0.451	-0.451
	37	0	13.02	9.45	0	0.33	0.33	V	0.363	0.421	0.451	-0.451
	38	0	13.35	9.45	0	0.33	0	P	0.39	0.388	0	0
	39	0	13.52	10.21	0	0.17	0.77	L	0.357	0.388	0.868	-0.868
	40	0	13.7	11.03	0	0.18	0.82	I	0.34	0.371	0.868	-0.868
	41	0	13.98	11.76	0	0.28	0.72	T	0.322	0.289	0.451	-0.451
	42	0	14.31	11.76	0	0.33	0	Y	0.367	0.284	0	0
	43	0	14.84	12.09	0	0.53	0.33	G	0.421	0.284	0.451	-0.451
	44	0	15.24	12.62	0	0.4	0.53	L	0.401	0.251	0.451	-0.451
	45	0	15.8	13.34	0	0.55	0.71	T	0.361	0.231	0.451	-0.451
	46	0	16.33	13.34	0	0.53	0	G	0.306	0.16	0	0
	47	0	16.93	13.34	0	0.6	0	L	0.273	0.213	0	0
	48	0	16.93	13.34	0	0	0	W	0.246	0.213	0	0
	49	0	16.93	13.94	0	0	0.6	P	0.279	0.213	0.693	-0.693
	50	0	16.93	13.94	0	0	0	L	0.306	0.22	0	0
	51	0	17.66	14.6	0	0.73	0.67	A	0.359	0.22	0.451	-0.451
	52	0	18.53	14.6	0	0.87	0	L	0.346	0.153	0	0
	53	0	18.86	14.6	0	0.33	0	L	0.319	0.153	0	0
	54	0	18.86	14.94	0	0	0.33	D	0.319	0.153	0.451	-0.451
	55	0	18.86	14.94	0	0	0	L	0.354444444	0.133333333	0	0
	56	0	19.06	15.47	0	0.2	0.53	L	0.39875	0.15	0.637	-0.637
	57	0	19.4	15.47	0	0.33	0	L	0.427142857	0.095714286	0	0
	58	0	19.73	15.47	0	0.33	0	P	0.443333333	0.111666667	0	0
	59	0	20	16.14	0	0.27	0.67	Q	0.466	0.134	0.451	-0.451
	60	0	20.53	16.14	0	0.53	0	R	0.515	0	0	0
	61	0	21.13	16.14	0	0.6	0	A	0.51	0	0	0
	62	0	21.73	16.14	0	0.6	0	Y	0.465	0	0	0
	63	0	22.06	16.14	0	0.33	0	A	0.33	0	0	0



Questions or comments? Contact us at hcv-info@lanl.gov