HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	63						
#k	The	average	behavior	for	253	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hq
	1	0	0.53	0	0	0.53	0	A	0.332	0.116	0	0
	2	0	1.13	0.03	0	0.6	0.03	L	0.322	0.116	0	0
	3	0	1.13	0.03	0	0	0	E	0.302	0.113	0	0
	4	0	1.22	0.03	0	0.09	0	K	0.374	0.122	0	0
	5	0	1.99	0.09	0	0.77	0.06	L	0.402	0.122	0	0
	6	0	2.08	0.4	0	0.09	0.3	V	0.361	0.125	0.462	-0.462
	7	0	2.17	0.87	0	0.09	0.47	I	0.376	0.165	0.646	-0.646
	8	0	2.42	0.87	0	0.25	0	L	0.384	0.135	0	0
	9	0	2.77	0.87	0	0.36	0	H	0.396	0.144	0	0
	10	0	3.32	1.17	0	0.54	0.3	A	0.399	0.235	0.462	-0.462
	11	0	3.75	1.17	0	0.43	0	A	0.416	0.214	0	0
	12	0	4.15	1.17	0	0.4	0	S	0.401	0.276	0	0
	13	0	4.87	1.26	0	0.72	0.09	A	0.391	0.276	0.179	-0.179
	14	0	5.25	1.26	0	0.37	0	A	0.319	0.319	0	0
	15	0	5.6	1.34	0	0.36	0.09	S	0.282	0.328	0.179	-0.179
	16	0	5.84	2.05	0	0.24	0.7	S	0.293	0.319	0.74	-0.74
	17	0	6	2.21	0	0.17	0.17	N	0.305	0.258	0.295	-0.295
	18	0	6.38	2.31	0	0.37	0.09	G	0.324	0.316	0.179	-0.179
	19	0	6.77	3.22	0	0.39	0.91	L	0.331	0.307	0.985	-0.985
	20	0	7.48	3.31	0	0.71	0.09	L	0.332	0.216	0.179	-0.179
	21	0	7.76	3.93	0	0.28	0.62	Y	0.261	0.207	0.65	-0.65
	22	0	8.07	3.93	0	0.3	0	F	0.241	0.182	0	0
	23	0	8.07	4.45	0	0	0.52	I	0.239	0.227	0.905	-0.905
	24	0	8.07	4.54	0	0	0.09	L	0.263	0.184	0.179	-0.179
	25	0	8.54	4.54	0	0.47	0	F	0.305	0.175	0	0
	26	0	8.9	4.63	0	0.36	0.09	F	0.316	0.177	0.179	-0.179
	27	0	9.26	5.38	0	0.36	0.75	V	0.324	0.214	0.755	-0.755
	28	0	9.7	5.38	0	0.44	0	A	0.288	0.156	0	0
	29	0	10.1	5.38	0	0.4	0	A	0.269	0.156	0	0
	30	0	10.1	5.38	0	0	0	W	0.257	0.209	0	0
	31	0	10.18	5.74	0	0.08	0.37	C	0.314	0.234	0.692	-0.692
	32	0	10.47	6.19	0	0.28	0.45	I	0.365	0.249	0.462	-0.462
	33	0	10.71	6.28	0	0.24	0.09	K	0.377	0.204	0.179	-0.179
	34	0	11.13	6.28	0	0.42	0	G	0.395	0.213	0	0
	35	0	11.71	6.3	0	0.58	0.02	R	0.402	0.266	0	0
	36	0	12.15	6.76	0	0.44	0.46	A	0.398	0.346	0.669	-0.669
	37	0	12.15	6.94	0	0	0.17	V	0.371	0.3	0.179	-0.179
	38	0	12.39	6.94	0	0.25	0	P	0.443	0.313	0	0
	39	0	12.67	7.47	0	0.28	0.53	M	0.418	0.313	0.753	-0.753
	40	0	13.24	7.72	0	0.57	0.25	V	0.421	0.312	0.47	-0.47
	41	0	13.83	8.25	0	0.59	0.52	T	0.404	0.287	0.692	-0.692
	42	0	14.24	8.25	0	0.4	0	Y	0.354	0.32	0	0
	43	0	14.66	8.42	0	0.42	0.18	T	0.365	0.322	0.356	-0.356
	44	0	15.15	8.96	0	0.49	0.53	L	0.393	0.304	0.632	-0.632
	45	0	15.69	9.77	0	0.54	0.82	L	0.361	0.287	0.574	-0.574
	46	0	15.85	9.77	0	0.17	0	G	0.364	0.229	0	0
	47	0	16.57	10.08	0	0.72	0.3	C	0.384	0.262	0.356	-0.356
	48	0	16.57	10.08	0	0	0	W	0.365	0.234	0	0
	49	0	16.88	10.6	0	0.31	0.52	S	0.403	0.234	0.692	-0.692
	50	0	17.29	10.6	0	0.4	0	F	0.414	0.199	0	0
	51	0	17.37	11.45	0	0.09	0.85	V	0.374	0.199	0.966	-0.966
	52	0	17.89	11.47	0	0.51	0.02	L	0.382	0.114	0	0
	53	0	18.59	11.47	0	0.7	0	L	0.371	0.112	0	0
	54	0	18.76	11.83	0	0.17	0.36	L	0.339	0.112	0.524	-0.524
	55	0	19.32	12.06	0	0.57	0.24	M	0.357777778	0.084444444	0.295	-0.295
	56	0	19.69	12.39	0	0.37	0.33	A	0.33125	0.065	0.47	-0.47
	57	0	20.22	12.41	0	0.53	0.02	L	0.325714286	0.027142857	0	0
	58	0	20.61	12.41	0	0.38	0	P	0.291666667	0.028333333	0	0
	59	0	21.02	12.58	0	0.42	0.17	H	0.274	0.034	0.356	-0.356
	60	0	21.02	12.58	0	0	0	Q	0.2375	0	0	0
	61	0	21.19	12.58	0	0.17	0	A	0.316666667	0	0	0
	62	0	21.59	12.58	0	0.4	0	Y	0.39	0	0	0
	63	0	21.98	12.58	0	0.38	0	A	0.38	0	0	0



Questions or comments? Contact us at hcv-info@lanl.gov