HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	64						
#k	The	average	behavior	for	28	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hb
	1	0	0	0	0	0	0	A	0.143	0.046	0	0
	2	0	0.25	0	0	0.25	0	L	0.168	0.046	0	0
	3	0	0.5	0	0	0.25	0	E	0.168	0.046	0	0
	4	0	0.5	0	0	0	0	N	0.143	0.046	0	0
	5	0	0.75	0	0	0.25	0	L	0.143	0.046	0	0
	6	0	1.18	0	0	0.43	0	V	0.118	0.046	0	0
	7	0	1.18	0.46	0	0	0.46	I	0.1	0.046	0.736	-0.736
	8	0	1.43	0.46	0	0.25	0	L	0.129	0.057	0	0
	9	0	1.43	0.46	0	0	0	N	0.104	0.057	0	0
	10	0	1.43	0.46	0	0	0	A	0.129	0.082	0	0
	11	0	1.68	0.46	0	0.25	0	A	0.183	0.107	0	0
	12	0	1.93	0.46	0	0.25	0	S	0.158	0.107	0	0
	13	0	1.93	0.46	0	0	0	L	0.133	0.132	0	0
	14	0	1.93	0.46	0	0	0	A	0.133	0.132	0	0
	15	0	1.93	0.46	0	0	0	G	0.133	0.157	0	0
	16	0	2.18	0.46	0	0.25	0	T	0.158	0.157	0	0
	17	0	2.46	1.04	0	0.29	0.57	R	0.133	0.157	0.736	-0.736
	18	0	2.46	1.04	0	0	0	G	0.104	0.1	0	0
	19	0	2.71	1.29	0	0.25	0.25	L	0.104	0.125	0.377	-0.377
	20	0	3.25	1.54	0	0.54	0.25	V	0.133	0.1	0.377	-0.377
	21	0	3.25	1.54	0	0	0	S	0.079	0.075	0	0
	22	0	3.25	1.79	0	0	0.25	F	0.079	0.075	0.377	-0.377
	23	0	3.25	1.79	0	0	0	L	0.104	0.05	0	0
	24	0	3.25	2.04	0	0	0.25	V	0.104	0.05	0.377	-0.377
	25	0	3.5	2.04	0	0.25	0	F	0.104	0.025	0	0
	26	0	3.5	2.04	0	0	0	F	0.079	0.025	0	0
	27	0	3.5	2.04	0	0	0	C	0.079	0.079	0	0
	28	0	3.5	2.29	0	0	0.25	F	0.079	0.079	0.377	-0.377
	29	0	4.04	2.29	0	0.54	0	A	0.079	0.054	0	0
	30	0	4.04	2.29	0	0	0	W	0.025	0.054	0	0
	31	0	4.04	2.29	0	0	0	Y	0.025	0.054	0	0
	32	0	4.29	2.29	0	0.25	0	L	0.05	0.079	0	0
	33	0	4.29	2.29	0	0	0	K	0.025	0.136	0	0
	34	0	4.29	2.29	0	0	0	G	0.025	0.136	0	0
	35	1	4.29	2.29	1	0	0	-	0.025	0.161	0.377	-0.377
	36	1	4.29	2.82	0	0	0.54	R	0.025	0.222	0.662	-0.662
	37	1	4.29	2.82	0	0	0	W	0.025	0.168	0	0
	38	1	4.29	2.82	0	0	0	V	0.025	0.168	0	0
	39	1	4.29	2.82	0	0	0	P	0.025	0.193	0	0
	40	1	4.29	2.82	0	0	0	G	0.025	0.193	0	0
	41	1	4.54	3.07	0	0.25	0.25	A	0.071	0.193	0.377	-0.377
	42	1	4.54	3.64	0	0	0.57	A	0.071	0.168	0.693	-0.693
	43	1	4.54	3.64	0	0	0	Y	0.071	0.111	0	0
	44	1	4.54	3.89	0	0	0.25	A	0.071	0.111	0.377	-0.377
	45	1	4.54	4.5	0	0	0.61	L	0.071	0.086	0.9	-0.9
	46	1	4.54	4.5	0	0	0	Y	0.071	0.025	0	0
	47	1	4.54	4.5	0	0	0	G	0.139	0.025	0	0
	48	1	4.54	4.75	0	0	0.25	M	0.139	0.025	0.377	-0.377
	49	1	4.54	4.75	0	0	0	W	0.139	0	0	0
	50	1	5	4.75	0	0.46	0	P	0.182	0	0	0
	51	1	5.25	4.75	0	0.25	0	L	0.179	0	0	0
	52	1	5.25	4.75	0	0	0	L	0.154	0	0	0
	53	1	5.25	4.75	0	0	0	L	0.197	0	0	0
	54	1	5.25	4.75	0	0	0	L	0.197	0	0	0
	55	1	5.25	4.75	0	0	0	L	0.24	0	0	0
	56	1	5.93	4.75	0	0.68	0	L	0.266666667	0	0	0
	57	1	5.93	4.75	0	0	0	A	0.215	0	0	0
	58	1	5.93	4.75	0	0	0	L	0.245714286	0	0	0
	59	1	6.36	4.75	0	0.43	0	P	0.286666667	0	0	0
	60	1	6.79	4.75	0	0.43	0	Q	0.258	0	0	0
	61	1	6.79	4.75	0	0	0	R	0.215	0	0	0
	62	1	7.21	4.75	0	0.43	0	A	0.286666667	0	0	0
	63	1	7.21	4.75	0	0	0	Y	0.215	0	0	0
	64	1	7.64	4.75	0	0.43	0	A	0.43	0	0	0



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