HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	262						
#k	The	average	behavior	for	15	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hq
	1	0	0.6	0	0	0.6	0	S	0.439	0.133	0	0
	2	0	1.4	0.4	0	0.8	0.4	R	0.419	0.166	0.451	-0.451
	3	0	1.4	0.4	0	0	0	H	0.372	0.199	0	0
	4	0	1.4	0.73	0	0	0.33	I	0.432	0.272	0.451	-0.451
	5	0	1.73	0.73	0	0.33	0	P	0.505	0.239	0	0
	6	0	2.07	0.73	0	0.33	0	Y	0.525	0.239	0	0
	7	0	2.67	0.73	0	0.6	0	L	0.525	0.239	0	0
	8	0	3.2	1.33	0	0.53	0.6	A	0.465	0.239	0.693	-0.693
	9	0	3.8	1.33	0	0.6	0	E	0.465	0.212	0	0
	10	0	4.4	1.33	0	0.6	0	G	0.438	0.212	0	0
	11	0	4.8	1.67	0	0.4	0.33	H	0.418	0.245	0.451	-0.451
	12	0	5.13	2.4	0	0.33	0.73	L	0.425	0.252	0.868	-0.868
	13	0	5.73	3.13	0	0.6	0.73	I	0.452	0.212	0.637	-0.637
	14	0	6.47	3.13	0	0.73	0	A	0.465	0.139	0	0
	15	0	7	3.13	0	0.53	0	E	0.465	0.159	0	0
	16	0	7.33	3.13	0	0.33	0	Q	0.455	0.249	0	0
	17	0	7.33	3.13	0	0	0	F	0.475	0.249	0	0
	18	0	7.87	3.47	0	0.53	0.33	K	0.505	0.386	0.451	-0.451
	19	0	8.2	3.47	0	0.33	0	Q	0.523	0.449	0	0
	20	0	8.6	3.8	0	0.4	0.33	K	0.547	0.539	0.451	-0.451
	21	0	9.07	4.2	0	0.47	0.4	V	0.584	0.556	0.451	-0.451
	22	0	9.67	4.53	0	0.6	0.33	L	0.577	0.549	0	0
	23	0	10.4	4.53	0	0.73	0	G	0.577	0.516	0	0
	24	0	11.13	4.73	0	0.73	0.2	L	0.564	0.516	0	0
	25	0	11.57	5.63	0	0.43	0.9	I	0.518	0.529	0.693	-0.693
	26	0	12.1	5.63	0	0.53	0	Q	0.545	0.482	0	0
	27	0	12.4	7	0	0.3	1.37	S	0.545	0.515	1.561	-1.561
	28	0	13.11	7.96	0	0.71	0.96	T	0.602	0.378	0.868	-0.868
	29	0	13.68	8.86	0	0.57	0.9	S	0.618	0.315	1.011	-1.011
	30	0	14.44	9.36	0	0.77	0.5	K	0.594	0.258	0.451	-0.451
	31	0	14.84	9.69	0	0.4	0.33	Q	0.557	0.241	0.451	-0.451
	32	0	15.44	9.69	0	0.6	0	A	0.59	0.241	0	0
	33	0	16.04	9.69	0	0.6	0	E	0.617	0.274	0	0
	34	0	16.31	10.02	0	0.27	0.33	E	0.557	0.274	0.451	-0.451
	35	0	17.01	10.46	0	0.7	0.43	L	0.603	0.241	0.451	-0.451
	36	0	17.54	10.79	0	0.53	0.33	K	0.566	0.251	0.451	-0.451
	37	0	18.41	10.79	0	0.87	0	P	0.586	0.271	0	0
	38	0	19.28	11.12	0	0.87	0.33	A	0.552	0.271	0.451	-0.451
	39	0	19.61	11.46	0	0.33	0.33	V	0.465	0.325	0.451	-0.451
	40	0	20.01	11.79	0	0.4	0.33	H	0.492	0.292	0.451	-0.451
	41	0	20.74	12.12	0	0.73	0.33	A	0.452	0.259	0.451	-0.451
	42	0	21.61	12.46	0	0.87	0.33	A	0.426	0.366	0.451	-0.451
	43	0	21.61	12.46	0	0	0	W	0.392	0.333	0	0
	44	0	22.34	12.46	0	0.73	0	P	0.432	0.366	0	0
	45	0	22.68	12.99	0	0.33	0.53	K	0.359	0.426	0.637	-0.637
	46	0	23.41	13.52	0	0.73	0.53	L	0.326	0.373	0.637	-0.637
	47	0	23.94	13.52	0	0.53	0	E	0.306	0.32	0	0
	48	0	23.94	14.39	0	0	0.87	Q	0.306	0.32	0.868	-0.868
	49	0	24.54	14.39	0	0.6	0	F	0.383	0.27	0	0
	50	0	24.54	14.39	0	0	0	W	0.383	0.27	0	0
	51	0	25.01	15.79	0	0.47	1.4	Q	0.456	0.27	1.011	-1.011
	52	0	25.54	15.79	0	0.53	0	K	0.479	0.18	0	0
	53	0	25.94	16.12	0	0.4	0.33	Q	0.486	0.18	0.451	-0.451
	54	0	25.94	16.72	0	0	0.6	L	0.499	0.147	0.693	-0.693
	55	0	25.94	16.72	0	0	0	W	0.606	0.087	0	0
	56	0	26.48	16.72	0	0.53	0	N	0.693	0.087	0	0
	57	0	27.01	16.72	0	0.53	0	F	0.64	0.087	0	0
	58	0	27.78	17.09	0	0.77	0.37	V	0.7	0.087	0.451	-0.451
	59	0	28.38	17.09	0	0.6	0	S	0.676	0.05	0	0
	60	0	29.11	17.09	0	0.73	0	G	0.703	0.05	0	0
	61	0	29.81	17.59	0	0.7	0.5	I	0.737	0.05	0.451	-0.451
	62	0	30.41	17.59	0	0.6	0	Q	0.74	0	0	0
	63	0	30.94	17.59	0	0.53	0	Y	0.74	0	0	0
	64	0	32.01	17.59	0	1.07	0	L	0.74	0.033	0	0
	65	0	32.88	17.59	0	0.87	0	A	0.713	0.033	0	0
	66	0	32.88	17.59	0	0	0	G	0.679	0.033	0	0
	67	0	34.01	17.59	0	1.13	0	L	0.749	0.076	0	0
	68	0	34.54	17.59	0	0.53	0	S	0.723	0.076	0	0
	69	0	35.41	17.59	0	0.87	0	T	0.757	0.109	0	0
	70	0	36.48	17.59	0	1.07	0	L	0.77	0.116	0	0
	71	0	37.21	17.59	0	0.73	0	P	0.663	0.116	0	0
	72	0	37.81	17.59	0	0.6	0	G	0.65	0.116	0	0
	73	0	38.34	17.92	0	0.53	0.33	N	0.623	0.116	0.451	-0.451
	74	0	39.14	17.92	0	0.8	0	P	0.63	0.136	0	0
	75	0	39.68	17.92	0	0.53	0	A	0.603	0.136	0	0
	76	0	40.38	18.36	0	0.7	0.43	I	0.61	0.169	0.451	-0.451
	77	0	41.24	18.36	0	0.87	0	A	0.64	0.146	0	0
	78	0	42.11	18.69	0	0.87	0.33	S	0.606	0.146	0.451	-0.451
	79	0	43.11	18.76	0	1	0.07	L	0.572	0.113	0	0
	80	0	43.11	18.76	0	0	0	M	0.552	0.106	0	0
	81	0	43.71	18.76	0	0.6	0	S	0.612	0.106	0	0
	82	0	44.04	18.76	0	0.33	0	F	0.616	0.228	0	0
	83	0	44.64	19.29	0	0.6	0.53	S	0.67	0.228	0.637	-0.637
	84	0	45.18	19.29	0	0.53	0	A	0.683	0.275	0	0
	85	0	45.78	19.62	0	0.6	0.33	S	0.683	0.382	0.451	-0.451
	86	0	46.78	19.82	0	1	0.2	L	0.656	0.349	0	0
	87	0	47.31	19.82	0	0.53	0	T	0.609	0.329	0	0
	88	0	47.84	19.82	0	0.53	0	S	0.656	0.342	0	0
	89	0	48.64	19.82	0	0.8	0	P	0.663	0.369	0	0
	90	0	49.24	19.82	0	0.6	0	L	0.616	0.369	0	0
	91	0	49.89	21.05	0	0.64	1.22	S	0.613	0.419	1.011	-1.011
	92	0	50.75	21.05	0	0.87	0	T	0.622	0.33	0	0
	93	0	51.49	22.05	0	0.73	1	H	0.608	0.33	0.868	-0.868
	94	0	52.02	23.11	0	0.53	1.07	Q	0.595	0.23	0.637	-0.637
	95	0	52.35	23.11	0	0.33	0	T	0.542	0.123	0	0
	96	0	52.89	23.11	0	0.53	0	L	0.569	0.19	0	0
	97	0	53.89	23.25	0	1	0.13	L	0.603	0.19	0	0
	98	0	54.49	23.51	0	0.6	0.27	L	0.583	0.21	0	0
	99	0	54.82	23.51	0	0.33	0	N	0.556	0.183	0	0
	100	0	55.39	24.01	0	0.57	0.5	I	0.596	0.236	0.451	-0.451
	101	0	56.12	24.35	0	0.73	0.33	L	0.619	0.186	0	0
	102	0	56.85	24.35	0	0.73	0	G	0.613	0.273	0	0
	103	0	57.45	24.35	0	0.6	0	G	0.6	0.273	0	0
	104	0	57.45	24.35	0	0	0	W	0.611	0.389	0	0
	105	0	58.05	25.01	0	0.6	0.67	V	0.691	0.422	0.637	-0.637
	106	0	58.92	25.01	0	0.87	0	A	0.691	0.388	0	0
	107	0	59.72	25.35	0	0.8	0.33	S	0.664	0.388	0.451	-0.451
	108	0	60.05	25.35	0	0.33	0	Q	0.644	0.355	0	0
	109	0	60.79	25.88	0	0.73	0.53	L	0.671	0.355	0.637	-0.637
	110	0	61.59	25.88	0	0.8	0	A	0.685	0.302	0	0
	111	0	62.25	27.08	0	0.67	1.2	N	0.692	0.302	1.011	-1.011
	112	0	62.85	27.08	0	0.6	0	P	0.658	0.182	0	0
	113	0	63.57	28.23	0	0.71	1.16	T	0.671	0.182	1.242	-1.242
	114	0	64.37	28.57	0	0.8	0.33	A	0.7	0.106	0.451	-0.451
	115	0	64.97	28.9	0	0.6	0.33	S	0.673	0.073	0.451	-0.451
	116	0	65.57	28.9	0	0.6	0	T	0.686	0.04	0	0
	117	0	66.17	28.9	0	0.6	0	A	0.686	0.04	0	0
	118	0	66.77	28.9	0	0.6	0	F	0.699	0.093	0	0
	119	0	67.63	28.9	0	0.87	0	V	0.702	0.136	0	0
	120	0	68.5	28.9	0	0.87	0	V	0.688	0.169	0	0
	121	0	68.83	28.9	0	0.33	0	S	0.634	0.169	0	0
	122	0	69.57	28.9	0	0.73	0	G	0.674	0.169	0	0
	123	0	70.57	29.3	0	1	0.4	L	0.681	0.202	0	0
	124	0	71.1	29.3	0	0.53	0	A	0.681	0.175	0	0
	125	0	71.83	29.3	0	0.73	0	G	0.701	0.175	0	0
	126	0	72.43	29.3	0	0.6	0	A	0.688	0.235	0	0
	127	0	73.17	29.83	0	0.73	0.53	A	0.701	0.235	0.637	-0.637
	128	0	73.8	30.27	0	0.63	0.43	V	0.695	0.262	0.451	-0.451
	129	0	74.53	30.6	0	0.73	0.33	G	0.682	0.262	0.451	-0.451
	130	0	74.87	30.6	0	0.33	0	S	0.642	0.229	0	0
	131	0	75.6	30.6	0	0.73	0	I	0.676	0.296	0	0
	132	0	76.4	30.93	0	0.8	0.33	G	0.693	0.366	0.451	-0.451
	133	0	77.4	31.07	0	1	0.13	L	0.673	0.333	0	0
	134	0	78.13	31.07	0	0.73	0	G	0.653	0.32	0	0
	135	0	78.73	31.67	0	0.6	0.6	R	0.64	0.32	0.637	-0.637
	136	0	79.47	31.67	0	0.73	0	V	0.667	0.26	0	0
	137	0	80.13	32.47	0	0.67	0.8	I	0.681	0.26	0.637	-0.637
	138	0	80.63	32.9	0	0.5	0.43	V	0.674	0.18	0.451	-0.451
	139	0	80.97	32.9	0	0.33	0	D	0.657	0.137	0	0
	140	0	81.63	33.57	0	0.67	0.67	V	0.704	0.17	0.637	-0.637
	141	0	82.53	34.27	0	0.9	0.7	L	0.71	0.103	0.451	-0.451
	142	0	83.13	34.27	0	0.6	0	A	0.707	0.033	0	0
	143	0	83.93	34.27	0	0.8	0	G	0.734	0.033	0	0
	144	0	84.53	34.27	0	0.6	0	Y	0.707	0.033	0	0
	145	0	85.4	34.27	0	0.87	0	G	0.72	0.033	0	0
	146	0	86.27	34.27	0	0.87	0	A	0.666	0.033	0	0
	147	0	86.87	34.27	0	0.6	0	G	0.639	0.033	0	0
	148	0	87.2	34.27	0	0.33	0	V	0.579	0.033	0	0
	149	0	88	34.6	0	0.8	0.33	S	0.546	0.033	0.451	-0.451
	150	0	88.73	34.6	0	0.73	0	G	0.466	0.033	0	0
	151	0	89.6	34.6	0	0.87	0	A	0.393	0.033	0	0
	152	0	90.47	34.6	0	0.87	0	L	0.306	0.033	0	0
	153	0	91	34.6	0	0.53	0	V	0.272	0.16	0	0
	154	0	91.73	34.6	0	0.73	0	A	0.292	0.16	0	0
	155	0	92.07	34.6	0	0.33	0	F	0.292	0.26	0	0
	156	0	92.67	34.6	0	0.6	0	K	0.343	0.369	0	0
	157	0	92.67	34.6	0	0	0	I	0.283	0.369	0	0
	158	0	92.67	34.6	0	0	0	M	0.316	0.369	0	0
	159	0	92.67	34.93	0	0	0.33	C	0.316	0.369	0.451	-0.451
	160	0	92.67	34.93	0	0	0	G	0.316	0.336	0	0
	161	0	92.67	34.93	0	0	0	E	0.369	0.336	0	0
	162	0	93.2	36.2	0	0.53	1.27	T	0.402	0.336	1.011	-1.011
	163	0	93.93	36.2	0	0.73	0	P	0.456	0.236	0	0
	164	0	94.67	37.2	0	0.73	1	S	0.47	0.236	0.451	-0.451
	165	0	95.51	38.29	0	0.84	1.09	A	0.47	0.136	1.099	-1.099
	166	0	95.51	38.29	0	0	0	E	0.459	0.027	0	0
	167	0	95.84	38.29	0	0.33	0	D	0.539	0.054	0	0
	168	0	95.84	38.29	0	0	0	M	0.606	0.074	0	0
	169	1	95.84	38.29	1	0	0	-	0.659	0.074	0	0
	170	1	96.38	38.29	0	0.53	0	V	0.732	0.074	0	0
	171	1	96.71	38.29	0	0.33	0	N	0.766	0.074	0	0
	172	1	97.78	38.56	0	1.07	0.27	L	0.82	0.107	0	0
	173	1	98.64	38.56	0	0.87	0	L	0.786	0.147	0	0
	174	1	99.38	38.56	0	0.73	0	P	0.772	0.18	0	0
	175	1	100.11	38.56	0	0.73	0	A	0.732	0.18	0	0
	176	1	100.91	38.82	0	0.8	0.27	L	0.746	0.18	0	0
	177	1	101.91	39.02	0	1	0.2	L	0.739	0.153	0	0
	178	1	102.44	39.02	0	0.53	0	S	0.719	0.133	0	0
	179	1	103.18	39.02	0	0.73	0	P	0.699	0.166	0	0
	180	1	104.04	39.02	0	0.87	0	G	0.659	0.166	0	0
	181	1	104.91	39.36	0	0.87	0.33	A	0.632	0.166	0.451	-0.451
	182	1	105.64	40.02	0	0.73	0.67	L	0.625	0.166	0.451	-0.451
	183	1	106.38	40.36	0	0.73	0.33	V	0.659	0.099	0.451	-0.451
	184	1	106.71	40.36	0	0.33	0	V	0.706	0.066	0	0
	185	1	107.58	40.36	0	0.87	0	G	0.706	0.066	0	0
	186	1	108.31	40.36	0	0.73	0	V	0.652	0.066	0	0
	187	1	109.11	40.36	0	0.8	0	V	0.652	0.119	0	0
	188	1	109.44	40.69	0	0.33	0.33	C	0.632	0.119	0.451	-0.451
	189	1	109.78	40.69	0	0.33	0	A	0.672	0.086	0	0
	190	1	110.38	40.69	0	0.6	0	A	0.672	0.219	0	0
	191	1	111.18	41.02	0	0.8	0.33	I	0.672	0.219	0.451	-0.451
	192	1	112.24	41.02	0	1.07	0	L	0.679	0.186	0	0
	193	1	113.44	41.02	0	1.2	0	R	0.632	0.186	0	0
	194	1	113.78	41.02	0	0.33	0	R	0.565	0.279	0	0
	195	1	114.11	41.02	0	0.33	0	H	0.565	0.279	0	0
	196	1	114.84	41.56	0	0.73	0.53	A	0.532	0.279	0.637	-0.637
	197	1	115.44	41.56	0	0.6	0	G	0.459	0.226	0	0
	198	1	116.18	41.56	0	0.73	0	P	0.399	0.226	0	0
	199	1	116.51	42.89	0	0.33	1.33	S	0.426	0.253	0.637	-0.637
	200	1	117.11	42.89	0	0.6	0	E	0.493	0.133	0	0
	201	1	117.98	42.89	0	0.87	0	G	0.433	0.133	0	0
	202	1	118.58	42.89	0	0.6	0	A	0.419	0.133	0	0
	203	1	119.11	43.82	0	0.53	0.93	T	0.412	0.133	1.011	-1.011
	204	1	119.44	43.82	0	0.33	0	Q	0.439	0.04	0	0
	205	1	119.44	43.82	0	0	0	W	0.493	0.04	0	0
	206	1	119.44	43.82	0	0	0	M	0.606	0.04	0	0
	207	1	119.44	43.82	0	0	0	N	0.639	0.04	0	0
	208	1	120.44	44.09	0	1	0.27	R	0.699	0.04	0	0
	209	1	121.44	44.22	0	1	0.13	L	0.652	0.013	0	0
	210	1	121.44	44.22	0	0	0	I	0.585	0	0	0
	211	1	122.18	44.22	0	0.73	0	A	0.658	0	0	0
	212	1	122.71	44.22	0	0.53	0	F	0.672	0	0	0
	213	1	123.51	44.22	0	0.8	0	A	0.679	0	0	0
	214	1	124.38	44.22	0	0.87	0	S	0.652	0	0	0
	215	1	125.51	44.22	0	1.13	0	R	0.625	0	0	0
	216	1	125.84	44.22	0	0.33	0	G	0.545	0	0	0
	217	1	126.44	44.22	0	0.6	0	N	0.565	0	0	0
	218	1	126.98	44.22	0	0.53	0	H	0.505	0	0	0
	219	1	127.31	44.22	0	0.33	0	V	0.532	0	0	0
	220	1	128.04	44.22	0	0.73	0	S	0.552	0	0	0
	221	1	128.91	44.22	0	0.87	0	P	0.552	0.053	0	0
	222	1	129.51	44.22	0	0.6	0	T	0.538	0.053	0	0
	223	1	130.04	44.22	0	0.53	0	H	0.545	0.166	0	0
	224	1	130.64	44.22	0	0.6	0	Y	0.532	0.333	0	0
	225	1	130.98	44.22	0	0.33	0	V	0.522	0.376	0	0
	226	1	131.51	44.22	0	0.53	0	P	0.536	0.456	0	0
	227	1	131.51	44.22	0	0	0	E	0.53	0.623	0	0
	228	1	132.31	44.22	0	0.8	0	T	0.53	0.623	0	0
	229	1	132.84	44.22	0	0.53	0	D	0.503	0.623	0	0
	230	1	133.58	44.76	0	0.73	0.53	T	0.45	0.71	0.637	-0.637
	231	1	134.31	44.76	0	0.73	0	S	0.437	0.657	0	0
	232	1	134.98	45.89	0	0.67	1.13	R	0.424	0.657	0.868	-0.868
	233	1	135.38	47.56	0	0.4	1.67	Q	0.41	0.544	1.33	-1.33
	234	1	135.88	47.99	0	0.5	0.43	I	0.43	0.444	0.451	-0.451
	235	1	136.34	48.79	0	0.47	0.8	M	0.433	0.401	0.637	-0.637
	236	1	136.81	50.46	0	0.47	1.67	T	0.419	0.321	1.33	-1.33
	237	1	136.81	50.46	0	0	0	I	0.445	0.154	0	0
	238	1	137.34	50.46	0	0.53	0	L	0.545	0.174	0	0
	239	1	137.34	51.32	0	0	0.87	S	0.565	0.174	0.451	-0.451
	240	1	137.94	51.32	0	0.6	0	S	0.618	0.147	0	0
	241	1	138.54	51.32	0	0.6	0	L	0.658	0.187	0	0
	242	1	139.08	51.32	0	0.53	0	T	0.658	0.187	0	0
	243	1	139.68	51.99	0	0.6	0.67	V	0.605	0.28	0.637	-0.637
	244	1	140.21	51.99	0	0.53	0	T	0.545	0.213	0	0
	245	1	140.54	51.99	0	0.33	0	S	0.545	0.246	0	0
	246	1	141.28	51.99	0	0.73	0	L	0.545	0.339	0	0
	247	1	142.28	52.19	0	1	0.2	L	0.523	0.495	0	0
	248	1	143.01	52.19	0	0.73	0	R	0.483	0.475	0	0
	249	1	143.54	52.79	0	0.53	0.6	K	0.417	0.628	0.693	-0.693
	250	1	144.54	53.19	0	1	0.4	L	0.424	0.621	0	0
	251	1	145.14	53.19	0	0.6	0	H	0.411	0.614	0	0
	252	1	145.14	54.12	0	0	0.93	E	0.424	0.614	1.011	-1.011
	253	1	145.14	54.12	0	0	0	W	0.477	0.521	0	0
	254	1	145.68	54.46	0	0.53	0.33	I	0.53	0.578888889	0.451	-0.451
	255	1	146.01	55.39	0	0.33	0.93	N	0.53	0.61	1.242	-1.242
	256	1	146.52	56.95	0	0.51	1.56	T	0.558571429	0.564285714	1.242	-1.242
	257	1	147.12	56.95	0	0.6	0	D	0.566666667	0.398333333	0	0
	258	1	147.19	58.48	0	0.07	1.53	W	0.56	0.478	1.011	-1.011
	259	1	147.79	59.01	0	0.6	0.53	S	0.6825	0.215	0.637	-0.637
	260	1	148.65	59.35	0	0.87	0.33	T	0.71	0.11	0.451	-0.451
	261	1	149.39	59.35	0	0.73	0	P	0.63	0	0	0
	262	1	149.92	59.35	0	0.53	0	C	0.53	0	0	0



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