HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	262						
#k	The	average	behavior	for	15	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hb
	1	0	0.8	0	0	0.8	0	S	0.431	0.133	0	0
	2	0	1.13	0.33	0	0.33	0.33	Q	0.384	0.133	0.451	-0.451
	3	0	1.87	0.67	0	0.73	0.33	S	0.411	0.173	0.451	-0.451
	4	0	2.4	1.33	0	0.53	0.67	A	0.371	0.14	0.451	-0.451
	5	0	3.13	1.33	0	0.73	0	P	0.351	0.073	0	0
	6	0	3.67	1.33	0	0.53	0	Y	0.285	0.126	0	0
	7	0	3.67	1.33	0	0	0	I	0.265	0.126	0	0
	8	0	4	1.33	0	0.33	0	E	0.298	0.126	0	0
	9	0	4	1.33	0	0	0	Q	0.265	0.126	0	0
	10	0	4.33	1.33	0	0.33	0	A	0.292	0.159	0	0
	11	0	4.67	1.33	0	0.33	0	Q	0.292	0.159	0	0
	12	0	5.27	2.07	0	0.6	0.73	A	0.259	0.192	1.011	-1.011
	13	0	5.6	2.07	0	0.33	0	I	0.252	0.152	0	0
	14	0	5.93	2.07	0	0.33	0	A	0.272	0.152	0	0
	15	0	6	2.6	0	0.07	0.53	Q	0.272	0.185	0.637	-0.637
	16	0	6.33	2.6	0	0.33	0	Q	0.325	0.139	0	0
	17	0	6.67	2.6	0	0.33	0	F	0.345	0.139	0	0
	18	0	6.67	2.6	0	0	0	K	0.375	0.176	0	0
	19	0	6.93	2.93	0	0.27	0.33	D	0.435	0.176	0.451	-0.451
	20	0	7.27	2.93	0	0.33	0	K	0.408	0.236	0	0
	21	0	7.27	3.27	0	0	0.33	V	0.428	0.236	0.451	-0.451
	22	0	7.8	3.6	0	0.53	0.33	L	0.461	0.236	0.451	-0.451
	23	0	8.33	3.6	0	0.53	0	G	0.425	0.306	0	0
	24	0	8.67	3.93	0	0.33	0.33	L	0.372	0.306	0	0
	25	0	9.27	4	0	0.6	0.07	L	0.379	0.346	0	0
	26	0	9.8	4	0	0.53	0	Q	0.352	0.339	0	0
	27	0	10.43	4.37	0	0.63	0.37	R	0.336	0.429	0.451	-0.451
	28	0	11.03	4.37	0	0.6	0	A	0.306	0.392	0	0
	29	0	11.03	5.3	0	0	0.93	S	0.246	0.392	0.868	-0.868
	30	0	11.57	5.3	0	0.53	0	Q	0.306	0.332	0	0
	31	0	11.9	5.63	0	0.33	0.33	Q	0.293	0.479	0.451	-0.451
	32	0	12.07	6.67	0	0.17	1.03	E	0.32	0.519	0.868	-0.868
	33	0	12.07	6.67	0	0	0	A	0.33	0.509	0	0
	34	0	12.47	7.4	0	0.4	0.73	E	0.33	0.509	0.868	-0.868
	35	0	12.8	7.4	0	0.33	0	I	0.323	0.436	0	0
	36	0	13.17	8.3	0	0.37	0.9	R	0.323	0.436	0.868	-0.868
	37	0	13.5	8.3	0	0.33	0	P	0.339	0.439	0	0
	38	0	13.5	8.3	0	0	0	I	0.306	0.439	0	0
	39	0	14.1	8.63	0	0.6	0.33	V	0.339	0.506	0.451	-0.451
	40	0	14.5	10.1	0	0.4	1.47	Q	0.306	0.506	1.33	-1.33
	41	0	15.1	10.83	0	0.6	0.73	S	0.266	0.359	1.011	-1.011
	42	0	15.37	11.77	0	0.27	0.93	Q	0.235	0.384	0.868	-0.868
	43	0	15.37	11.77	0	0	0	W	0.241	0.324	0	0
	44	0	15.7	11.77	0	0.33	0	Q	0.294	0.324	0	0
	45	0	16.03	11.77	0	0.33	0	K	0.261	0.324	0	0
	46	0	16.57	12.7	0	0.53	0.93	A	0.228	0.324	0.451	-0.451
	47	0	16.57	12.7	0	0	0	E	0.228	0.231	0	0
	48	0	16.9	13.37	0	0.33	0.67	A	0.228	0.231	0.868	-0.868
	49	0	17.17	13.7	0	0.27	0.33	F	0.228	0.164	0.451	-0.451
	50	0	17.17	13.7	0	0	0	W	0.261	0.131	0	0
	51	0	17.46	14.68	0	0.29	0.98	Q	0.261	0.131	0.868	-0.868
	52	0	17.79	15.01	0	0.33	0.33	Q	0.265	0.033	0.451	-0.451
	53	0	18.32	15.01	0	0.53	0	H	0.292	0	0	0
	54	0	18.32	15.01	0	0	0	M	0.239	0	0	0
	55	0	18.32	15.01	0	0	0	W	0.326	0	0	0
	56	0	18.86	15.01	0	0.53	0	N	0.379	0	0	0
	57	0	18.86	15.01	0	0	0	F	0.386	0	0	0
	58	0	19.19	15.01	0	0.33	0	V	0.419	0.033	0	0
	59	0	19.79	15.01	0	0.6	0	S	0.386	0.066	0	0
	60	0	19.79	15.01	0	0	0	G	0.399	0.066	0	0
	61	0	20.12	15.01	0	0.33	0	I	0.486	0.066	0	0
	62	0	20.72	15.01	0	0.6	0	Q	0.526	0.066	0	0
	63	0	20.72	15.01	0	0	0	Y	0.519	0.066	0	0
	64	0	21.59	15.01	0	0.87	0	L	0.572	0.066	0	0
	65	0	22.12	15.01	0	0.53	0	A	0.485	0.066	0	0
	66	0	22.72	15.01	0	0.6	0	G	0.465	0.066	0	0
	67	0	23.06	15.34	0	0.33	0.33	L	0.422	0.116	0	0
	68	0	23.06	15.68	0	0	0.33	S	0.449	0.083	0.451	-0.451
	69	0	23.79	15.68	0	0.73	0	T	0.482	0.05	0	0
	70	0	24.66	15.68	0	0.87	0	L	0.442	0.05	0	0
	71	0	25.39	15.68	0	0.73	0	P	0.355	0.05	0	0
	72	0	25.92	15.68	0	0.53	0	G	0.342	0.05	0	0
	73	0	26.46	15.68	0	0.53	0	N	0.322	0.05	0	0
	74	0	26.46	15.68	0	0	0	P	0.329	0.05	0	0
	75	0	26.79	15.68	0	0.33	0	A	0.389	0.05	0	0
	76	0	26.96	16.18	0	0.17	0.5	V	0.409	0.05	0.451	-0.451
	77	0	27.56	16.18	0	0.6	0	A	0.452	0	0	0
	78	0	27.89	16.18	0	0.33	0	S	0.392	0	0	0
	79	0	28.22	16.18	0	0.33	0	L	0.412	0	0	0
	80	0	28.22	16.18	0	0	0	M	0.412	0	0	0
	81	0	28.82	16.18	0	0.6	0	A	0.472	0	0	0
	82	0	29.16	16.18	0	0.33	0	F	0.465	0	0	0
	83	0	29.76	16.18	0	0.6	0	T	0.465	0	0	0
	84	0	30.36	16.18	0	0.6	0	A	0.438	0	0	0
	85	0	30.89	16.18	0	0.53	0	S	0.411	0	0	0
	86	0	31.49	16.18	0	0.6	0	V	0.391	0	0	0
	87	0	31.49	16.18	0	0	0	T	0.348	0.05	0	0
	88	0	32.02	16.18	0	0.53	0	S	0.408	0.083	0	0
	89	0	32.36	16.18	0	0.33	0	P	0.408	0.083	0	0
	90	0	32.96	16.18	0	0.6	0	L	0.375	0.083	0	0
	91	0	33.49	16.18	0	0.53	0	T	0.348	0.083	0	0
	92	0	33.82	16.18	0	0.33	0	T	0.338	0.133	0	0
	93	0	34.16	16.18	0	0.33	0	N	0.338	0.133	0	0
	94	0	34.49	16.18	0	0.33	0	Q	0.378	0.133	0	0
	95	0	34.82	16.18	0	0.33	0	T	0.345	0.133	0	0
	96	0	34.99	16.68	0	0.17	0.5	M	0.372	0.133	0.451	-0.451
	97	0	35.59	17.01	0	0.6	0.33	F	0.388	0.083	0.451	-0.451
	98	0	36.12	17.01	0	0.53	0	F	0.385	0.087	0	0
	99	0	36.12	17.01	0	0	0	N	0.365	0.12	0	0
	100	0	36.46	17.01	0	0.33	0	I	0.432	0.12	0	0
	101	0	36.89	17.51	0	0.43	0.5	L	0.432	0.12	0.451	-0.451
	102	0	37.22	17.51	0	0.33	0	G	0.462	0.137	0	0
	103	0	37.96	17.51	0	0.73	0	G	0.482	0.137	0	0
	104	0	37.96	17.51	0	0	0	W	0.456	0.237	0	0
	105	0	38.56	17.51	0	0.6	0	V	0.483	0.364	0	0
	106	0	38.89	17.51	0	0.33	0	A	0.476	0.364	0	0
	107	0	39.46	17.88	0	0.57	0.37	T	0.476	0.397	0.451	-0.451
	108	0	39.79	18.21	0	0.33	0.33	H	0.472	0.36	0.451	-0.451
	109	0	40.46	18.21	0	0.67	0	L	0.499	0.327	0	0
	110	0	40.79	18.21	0	0.33	0	A	0.432	0.327	0	0
	111	0	41.52	18.88	0	0.73	0.67	G	0.432	0.327	0.451	-0.451
	112	0	42.06	18.88	0	0.53	0	P	0.392	0.26	0	0
	113	0	42.52	19.88	0	0.47	1	A	0.339	0.26	0.868	-0.868
	114	0	42.79	21.14	0	0.27	1.27	A	0.292	0.16	0.693	-0.693
	115	0	43.32	21.14	0	0.53	0	S	0.338	0.033	0	0
	116	0	43.66	21.48	0	0.33	0.33	S	0.318	0.033	0.451	-0.451
	117	0	44.19	21.48	0	0.53	0	A	0.338	0	0	0
	118	0	44.79	21.48	0	0.6	0	F	0.338	0	0	0
	119	0	44.79	21.48	0	0	0	V	0.298	0.067	0	0
	120	0	45.12	21.48	0	0.33	0	V	0.351	0.067	0	0
	121	0	45.46	21.48	0	0.33	0	S	0.371	0.1	0	0
	122	0	45.46	21.48	0	0	0	G	0.371	0.1	0	0
	123	0	45.46	21.48	0	0	0	L	0.404	0.1	0	0
	124	0	46.19	21.48	0	0.73	0	A	0.474	0.15	0	0
	125	0	46.52	21.48	0	0.33	0	G	0.401	0.15	0	0
	126	0	47.06	21.48	0	0.53	0	A	0.401	0.183	0	0
	127	0	47.59	21.48	0	0.53	0	A	0.381	0.183	0	0
	128	0	47.79	22.14	0	0.2	0.67	V	0.361	0.183	0.637	-0.637
	129	0	48.32	22.14	0	0.53	0	G	0.374	0.116	0	0
	130	0	48.86	22.48	0	0.53	0.33	G	0.321	0.116	0.451	-0.451
	131	0	49.19	22.48	0	0.33	0	I	0.311	0.133	0	0
	132	0	49.52	22.48	0	0.33	0	G	0.311	0.133	0	0
	133	0	50.22	22.98	0	0.7	0.5	I	0.311	0.133	0.451	-0.451
	134	0	50.22	22.98	0	0	0	G	0.301	0.083	0	0
	135	0	50.56	23.31	0	0.33	0.33	R	0.361	0.083	0.451	-0.451
	136	0	50.89	23.31	0	0.33	0	V	0.381	0.05	0	0
	137	0	51.22	23.31	0	0.33	0	L	0.348	0.05	0	0
	138	0	51.56	23.31	0	0.33	0	L	0.368	0.05	0	0
	139	0	51.56	23.31	0	0	0	D	0.368	0.05	0	0
	140	0	51.99	23.81	0	0.43	0.5	V	0.428	0.083	0.451	-0.451
	141	0	52.32	23.81	0	0.33	0	L	0.418	0.033	0	0
	142	0	52.66	23.81	0	0.33	0	A	0.418	0.033	0	0
	143	0	53.26	23.81	0	0.6	0	G	0.452	0.033	0	0
	144	0	53.86	23.81	0	0.6	0	Y	0.452	0.033	0	0
	145	0	54.39	23.81	0	0.53	0	G	0.452	0.033	0	0
	146	0	54.39	23.81	0	0	0	A	0.432	0.033	0	0
	147	0	54.92	23.81	0	0.53	0	G	0.465	0.033	0	0
	148	0	55.26	23.81	0	0.33	0	V	0.412	0.033	0	0
	149	0	55.86	24.14	0	0.6	0.33	S	0.379	0.033	0.451	-0.451
	150	0	56.19	24.14	0	0.33	0	G	0.352	0	0	0
	151	0	56.52	24.14	0	0.33	0	A	0.352	0	0	0
	152	0	57.19	24.14	0	0.67	0	L	0.352	0	0	0
	153	0	57.79	24.14	0	0.6	0	V	0.299	0.139	0	0
	154	0	58.39	24.14	0	0.6	0	A	0.272	0.139	0	0
	155	0	58.72	24.14	0	0.33	0	F	0.265	0.172	0	0
	156	0	59.06	24.14	0	0.33	0	K	0.292	0.225	0	0
	157	0	59.06	24.14	0	0	0	I	0.259	0.225	0	0
	158	0	59.06	24.14	0	0	0	M	0.259	0.225	0	0
	159	0	59.39	24.14	0	0.33	0	G	0.259	0.258	0	0
	160	0	59.72	24.14	0	0.33	0	G	0.226	0.258	0	0
	161	0	60.06	24.14	0	0.33	0	E	0.226	0.258	0	0
	162	0	60.2	25.53	0	0.14	1.39	L	0.246	0.258	1.242	-1.242
	163	0	60.53	25.53	0	0.33	0	P	0.292	0.119	0	0
	164	0	61.07	25.87	0	0.53	0.33	T	0.292	0.119	0.451	-0.451
	165	0	61.67	26.4	0	0.6	0.53	T	0.292	0.086	0.637	-0.637
	166	0	61.67	26.4	0	0	0	E	0.232	0.033	0	0
	167	0	61.67	26.4	0	0	0	D	0.285	0.033	0	0
	168	0	61.67	26.73	0	0	0.33	M	0.338	0.033	0.451	-0.451
	169	1	61.67	26.73	1	0	0	-	0.391	0	0	0
	170	1	62	26.73	0	0.33	0	V	0.451	0	0	0
	171	1	62.53	26.73	0	0.53	0	N	0.478	0	0	0
	172	1	63.13	26.73	0	0.6	0	L	0.458	0	0	0
	173	1	63.47	26.73	0	0.33	0	L	0.465	0.027	0	0
	174	1	64	26.73	0	0.53	0	P	0.492	0.027	0	0
	175	1	64	26.73	0	0	0	A	0.492	0.027	0	0
	176	1	64.53	26.73	0	0.53	0	I	0.545	0.027	0	0
	177	1	65.07	26.73	0	0.53	0	L	0.492	0.027	0	0
	178	1	65.6	26.73	0	0.53	0	S	0.472	0.027	0	0
	179	1	66.2	26.73	0	0.6	0	P	0.452	0.027	0	0
	180	1	66.8	26.73	0	0.6	0	G	0.445	0.027	0	0
	181	1	67.13	26.73	0	0.33	0	A	0.445	0.027	0	0
	182	1	67.8	27	0	0.67	0.27	L	0.455	0.077	0	0
	183	1	68.4	27	0	0.6	0	V	0.501	0.05	0	0
	184	1	68.93	27	0	0.53	0	V	0.494	0.05	0	0
	185	1	69.47	27	0	0.53	0	G	0.494	0.05	0	0
	186	1	69.47	27	0	0	0	V	0.474	0.05	0	0
	187	1	69.8	27	0	0.33	0	I	0.507	0.05	0	0
	188	1	70.13	27	0	0.33	0	C	0.507	0.05	0	0
	189	1	70.67	27	0	0.53	0	A	0.507	0.05	0	0
	190	1	71.27	27	0	0.6	0	A	0.454	0.05	0	0
	191	1	71.7	27.5	0	0.43	0.5	V	0.427	0.05	0.451	-0.451
	192	1	72.83	27.5	0	1.13	0	L	0.444	0	0	0
	193	1	73.37	27.5	0	0.53	0	R	0.384	0.033	0	0
	194	1	73.9	27.5	0	0.53	0	R	0.391	0.033	0	0
	195	1	74.23	27.5	0	0.33	0	H	0.371	0.033	0	0
	196	1	74.57	27.5	0	0.33	0	V	0.338	0.033	0	0
	197	1	74.9	27.5	0	0.33	0	G	0.305	0.033	0	0
	198	1	75.23	27.5	0	0.33	0	P	0.305	0.033	0	0
	199	1	75.23	27.5	0	0	0	G	0.305	0.033	0	0
	200	1	75.57	27.5	0	0.33	0	E	0.338	0.066	0	0
	201	1	76.17	27.5	0	0.6	0	G	0.378	0.066	0	0
	202	1	76.7	27.83	0	0.53	0.33	A	0.391	0.066	0.451	-0.451
	203	1	77.3	27.83	0	0.6	0	V	0.338	0.033	0	0
	204	1	77.63	27.83	0	0.33	0	Q	0.278	0.033	0	0
	205	1	77.63	27.83	0	0	0	W	0.278	0.033	0	0
	206	1	77.63	27.83	0	0	0	M	0.345	0.033	0	0
	207	1	77.97	27.83	0	0.33	0	N	0.378	0.033	0	0
	208	1	78.3	27.83	0	0.33	0	R	0.345	0.033	0	0
	209	1	78.63	28.17	0	0.33	0.33	L	0.365	0.033	0	0
	210	1	79.37	28.17	0	0.73	0	I	0.405	0	0	0
	211	1	80.1	28.17	0	0.73	0	A	0.332	0.033	0	0
	212	1	80.1	28.17	0	0	0	F	0.312	0.033	0	0
	213	1	80.1	28.17	0	0	0	A	0.372	0.066	0	0
	214	1	80.43	28.17	0	0.33	0	S	0.372	0.066	0	0
	215	1	81.1	28.17	0	0.67	0	R	0.339	0.066	0	0
	216	1	81.43	28.17	0	0.33	0	G	0.325	0.066	0	0
	217	1	81.43	28.17	0	0	0	N	0.325	0.066	0	0
	218	1	81.97	28.17	0	0.53	0	H	0.325	0.066	0	0
	219	1	82.7	28.17	0	0.73	0	V	0.272	0.066	0	0
	220	1	82.7	28.5	0	0	0.33	S	0.232	0.066	0.451	-0.451
	221	1	83.23	28.5	0	0.53	0	P	0.292	0.033	0	0
	222	1	83.83	28.83	0	0.6	0.33	T	0.272	0.033	0.451	-0.451
	223	1	83.83	28.83	0	0	0	H	0.265	0	0	0
	224	1	83.83	28.83	0	0	0	Y	0.298	0.06	0	0
	225	1	84.37	28.83	0	0.53	0	V	0.358	0.06	0	0
	226	1	84.7	28.83	0	0.33	0	P	0.378	0.06	0	0
	227	1	84.7	28.83	0	0	0	E	0.345	0.06	0	0
	228	1	84.7	28.83	0	0	0	S	0.378	0.06	0	0
	229	1	85.03	28.83	0	0.33	0	D	0.411	0.06	0	0
	230	1	85.63	28.83	0	0.6	0	A	0.431	0.06	0	0
	231	1	85.97	28.83	0	0.33	0	A	0.404	0.06	0	0
	232	1	86.5	28.83	0	0.53	0	A	0.438	0.06	0	0
	233	1	86.83	29.43	0	0.33	0.6	K	0.445	0.06	0.693	-0.693
	234	1	87.43	29.43	0	0.6	0	V	0.445	0	0	0
	235	1	88.17	29.43	0	0.73	0	T	0.418	0	0	0
	236	1	88.17	29.43	0	0	0	A	0.407	0.105	0	0
	237	1	88.5	29.43	0	0.33	0	L	0.494	0.112	0	0
	238	1	88.83	29.43	0	0.33	0	L	0.494	0.112	0	0
	239	1	89.37	29.43	0	0.53	0	S	0.514	0.112	0	0
	240	1	89.7	29.43	0	0.33	0	S	0.461	0.112	0	0
	241	1	90.37	29.43	0	0.67	0	L	0.488	0.145	0	0
	242	1	90.97	29.43	0	0.6	0	T	0.421	0.145	0	0
	243	1	91.3	29.43	0	0.33	0	V	0.361	0.145	0	0
	244	1	91.63	29.43	0	0.33	0	T	0.328	0.145	0	0
	245	1	92.26	30.48	0	0.62	1.05	R	0.295	0.145	0.868	-0.868
	246	1	93.12	30.54	0	0.87	0.07	L	0.286	0.04	0	0
	247	1	93.46	30.54	0	0.33	0	L	0.232	0.033	0	0
	248	1	93.99	30.54	0	0.53	0	R	0.232	0.033	0	0
	249	1	93.99	30.54	0	0	0	R	0.232	0.033	0	0
	250	1	94.59	30.88	0	0.6	0.33	L	0.292	0.033	0	0
	251	1	94.59	30.88	0	0	0	H	0.285	0.033	0	0
	252	1	94.59	30.88	0	0	0	Q	0.318	0.033	0	0
	253	1	94.59	30.88	0	0	0	W	0.371	0.033	0	0
	254	1	94.59	30.88	0	0	0	I	0.412222222	0.036666667	0	0
	255	1	95.12	30.88	0	0.53	0	N	0.46375	0.04125	0	0
	256	1	95.46	30.88	0	0.33	0	E	0.454285714	0.047142857	0	0
	257	1	95.79	30.88	0	0.33	0	D	0.475	0.055	0	0
	258	1	96.32	30.88	0	0.53	0	Y	0.504	0.066	0	0
	259	1	96.92	30.88	0	0.6	0	P	0.4975	0.0825	0	0
	260	1	97.46	31.21	0	0.53	0.33	S	0.463333333	0.11	0.451	-0.451
	261	1	97.79	31.21	0	0.33	0	P	0.43	0	0	0
	262	1	98.32	31.21	0	0.53	0	C	0.53	0	0	0



Questions or comments? Contact us at hcv-info@lanl.gov