HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	262						
#k	The	average	behavior	for	78	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hb
	1	0	0.15	0	0	0.15	0	A	0.356	0.112	0	0
	2	0	0.62	0	0	0.46	0	S	0.355	0.127	0	0
	3	0	1.08	0.38	0	0.46	0.38	R	0.347	0.127	0	0
	4	0	1.64	0.54	0	0.56	0.15	T	0.301	0.127	0.271	-0.271
	5	0	2.15	0.85	0	0.51	0.31	A	0.309	0.112	0.271	-0.271
	6	0	2.31	0.85	0	0.15	0	L	0.273	0.081	0	0
	7	0	2.69	1.13	0	0.38	0.28	I	0.258	0.081	0.429	-0.429
	8	0	3.21	1.13	0	0.51	0	E	0.293	0.061	0	0
	9	0	3.59	1.13	0	0.38	0	E	0.288	0.076	0	0
	10	0	3.59	1.13	0	0	0	G	0.288	0.076	0	0
	11	0	3.73	1.28	0	0.14	0.15	H	0.334	0.076	0.271	-0.271
	12	0	4.12	1.28	0	0.38	0	R	0.376	0.061	0	0
	13	0	4.12	1.67	0	0	0.38	I	0.366	0.076	0.54	-0.54
	14	0	4.76	1.67	0	0.64	0	A	0.366	0.038	0	0
	15	0	4.91	1.67	0	0.15	0	E	0.373	0.073	0	0
	16	0	4.91	1.67	0	0	0	M	0.446	0.091	0	0
	17	0	5.64	1.74	0	0.73	0.08	L	0.497	0.091	0	0
	18	0	6.1	1.9	0	0.46	0.15	K	0.47	0.083	0	0
	19	0	6.49	1.9	0	0.38	0	S	0.462	0.068	0	0
	20	0	6.95	1.9	0	0.46	0	K	0.5	0.114	0	0
	21	0	7.51	1.9	0	0.56	0	I	0.5	0.142	0	0
	22	0	7.79	2.05	0	0.28	0.15	Q	0.495	0.142	0.271	-0.271
	23	0	7.79	2.05	0	0	0	G	0.526	0.127	0	0
	24	0	8.5	2.4	0	0.71	0.35	L	0.571	0.142	0	0
	25	0	9.38	2.58	0	0.88	0.18	M	0.533	0.13	0	0
	26	0	9.9	2.58	0	0.51	0	Q	0.46	0.127	0	0
	27	0	10.36	2.58	0	0.46	0	Q	0.444	0.142	0	0
	28	0	10.74	2.58	0	0.38	0	A	0.448	0.142	0	0
	29	0	11.5	3.04	0	0.76	0.46	S	0.438	0.157	0	0
	30	0	11.96	3.32	0	0.46	0.28	K	0.384	0.167	0	0
	31	0	12.47	3.32	0	0.51	0	Q	0.366	0.139	0	0
	32	0	13.06	3.32	0	0.59	0	A	0.371	0.177	0	0
	33	0	13.51	3.47	0	0.45	0.15	Q	0.34	0.205	0.271	-0.271
	34	0	13.85	3.71	0	0.33	0.23	G	0.295	0.19	0.271	-0.271
	35	0	14	3.86	0	0.15	0.15	V	0.262	0.167	0	0
	36	0	14.35	4.01	0	0.35	0.15	Q	0.285	0.167	0.271	-0.271
	37	0	14.85	4.01	0	0.5	0	P	0.318	0.212	0	0
	38	0	15.13	4.17	0	0.28	0.15	A	0.322	0.212	0.271	-0.271
	39	0	15.35	4.73	0	0.22	0.56	V	0.294	0.197	0.429	-0.429
	40	0	15.63	4.73	0	0.28	0	Q	0.323	0.141	0	0
	41	0	16.19	5.12	0	0.56	0.38	A	0.295	0.141	0.54	-0.54
	42	0	16.47	5.4	0	0.28	0.28	T	0.239	0.103	0	0
	43	0	16.47	5.4	0	0	0	W	0.249	0.103	0	0
	44	0	16.47	5.4	0	0	0	P	0.264	0.103	0	0
	45	0	16.86	5.55	0	0.38	0.15	K	0.264	0.103	0	0
	46	0	17.54	6.15	0	0.68	0.6	L	0.226	0.088	0.617	-0.617
	47	0	18.08	6.15	0	0.54	0	E	0.173	0.028	0	0
	48	0	18.08	6.15	0	0	0	Q	0.119	0.028	0	0
	49	0	18.59	6.15	0	0.51	0	F	0.173	0.028	0	0
	50	0	18.59	6.15	0	0	0	W	0.176	0.028	0	0
	51	0	18.59	6.15	0	0	0	A	0.214	0.028	0	0
	52	0	18.97	6.44	0	0.38	0.28	K	0.281	0.028	0	0
	53	0	19.13	6.44	0	0.15	0	H	0.297	0	0	0
	54	0	19.13	6.44	0	0	0	M	0.32	0	0	0
	55	0	19.13	6.44	0	0	0	W	0.384	0.012	0	0
	56	0	19.28	6.44	0	0.15	0	N	0.435	0.012	0	0
	57	0	19.28	6.44	0	0	0	F	0.435	0.012	0	0
	58	0	19.82	6.44	0	0.54	0	I	0.518	0.017	0	0
	59	0	20.36	6.44	0	0.54	0	S	0.515	0.017	0	0
	60	0	20.74	6.44	0	0.38	0	G	0.519	0.017	0	0
	61	0	21.41	6.44	0	0.67	0	I	0.567	0.02	0	0
	62	0	21.95	6.44	0	0.54	0	Q	0.556	0.02	0	0
	63	0	22.33	6.44	0	0.38	0	Y	0.553	0.02	0	0
	64	0	22.97	6.55	0	0.64	0.12	L	0.561	0.02	0	0
	65	0	23.49	6.55	0	0.51	0	A	0.548	0.008	0	0
	66	0	23.64	6.55	0	0.15	0	G	0.569	0.008	0	0
	67	0	24.47	6.6	0	0.83	0.05	L	0.6	0.008	0	0
	68	0	24.99	6.6	0	0.51	0	S	0.567	0.003	0	0
	69	0	25.56	6.6	0	0.58	0	T	0.567	0.018	0	0
	70	0	26.42	6.63	0	0.86	0.03	L	0.509	0.018	0	0
	71	0	26.99	6.63	0	0.56	0	P	0.423	0.015	0	0
	72	0	27.5	6.63	0	0.51	0	G	0.44	0.03	0	0
	73	0	27.96	6.63	0	0.46	0	N	0.404	0.03	0	0
	74	0	28.47	6.63	0	0.51	0	P	0.404	0.03	0	0
	75	0	29.19	6.63	0	0.72	0	A	0.368	0.03	0	0
	76	0	29.65	6.63	0	0.46	0	V	0.356	0.03	0	0
	77	0	30.15	6.63	0	0.5	0	A	0.365	0.056	0	0
	78	0	30.67	6.78	0	0.51	0.15	S	0.361	0.056	0.271	-0.271
	79	0	30.67	6.78	0	0	0	M	0.364	0.041	0	0
	80	0	30.67	6.78	0	0	0	M	0.415	0.041	0	0
	81	0	31.4	6.94	0	0.73	0.15	S	0.501	0.05	0.271	-0.271
	82	0	31.55	6.94	0	0.15	0	F	0.5	0.081	0	0
	83	0	32.01	6.94	0	0.46	0	S	0.547	0.081	0	0
	84	0	32.17	6.94	0	0.15	0	A	0.529	0.081	0	0
	85	0	32.77	6.94	0	0.6	0	A	0.542	0.081	0	0
	86	0	33.32	7.19	0	0.55	0.26	L	0.536	0.081	0	0
	87	0	33.78	7.19	0	0.46	0	T	0.481	0.055	0	0
	88	0	34.32	7.19	0	0.54	0	S	0.489	0.055	0	0
	89	0	34.83	7.19	0	0.51	0	P	0.507	0.09	0	0
	90	0	35.69	7.28	0	0.86	0.09	L	0.456	0.09	0	0
	91	0	36.41	7.74	0	0.72	0.46	S	0.426	0.081	0.617	-0.617
	92	0	37.03	7.74	0	0.62	0	T	0.36	0.081	0	0
	93	0	37.31	7.74	0	0.28	0	S	0.352	0.081	0	0
	94	0	37.59	7.74	0	0.28	0	T	0.386	0.081	0	0
	95	0	38.13	7.74	0	0.54	0	T	0.358	0.081	0	0
	96	0	38.13	7.74	0	0	0	I	0.405	0.086	0	0
	97	0	38.67	7.74	0	0.54	0	L	0.479	0.086	0	0
	98	0	39.38	8.09	0	0.72	0.35	L	0.44	0.086	0	0
	99	0	39.38	8.09	0	0	0	N	0.419	0.051	0	0
	100	0	39.95	8.09	0	0.56	0	I	0.47	0.051	0	0
	101	0	40.01	8.55	0	0.06	0.46	M	0.488	0.051	0	0
	102	0	40.55	8.55	0	0.54	0	G	0.555	0.005	0	0
	103	0	41.17	8.55	0	0.62	0	G	0.539	0.02	0	0
	104	0	41.17	8.55	0	0	0	W	0.539	0.02	0	0
	105	0	42.18	8.6	0	1.01	0.05	L	0.577	0.02	0	0
	106	0	42.92	8.6	0	0.74	0	A	0.491	0.015	0	0
	107	0	43.08	8.6	0	0.15	0	S	0.471	0.015	0	0
	108	0	43.59	8.6	0	0.51	0	Q	0.456	0.015	0	0
	109	0	44.1	8.6	0	0.51	0	I	0.433	0.015	0	0
	110	0	44.85	8.6	0	0.74	0	A	0.428	0.015	0	0
	111	0	45.58	8.6	0	0.73	0	P	0.369	0.015	0	0
	112	0	45.96	8.76	0	0.38	0.15	P	0.311	0.015	0.271	-0.271
	113	0	46.58	8.76	0	0.62	0	A	0.301	0	0	0
	114	0	46.96	8.76	0	0.38	0	G	0.308	0	0	0
	115	0	47.12	8.76	0	0.15	0	A	0.298	0	0	0
	116	0	47.65	8.76	0	0.54	0	T	0.298	0	0	0
	117	0	47.65	8.76	0	0	0	G	0.306	0	0	0
	118	0	47.94	8.76	0	0.28	0	F	0.347	0	0	0
	119	0	48.4	8.76	0	0.46	0	V	0.384	0	0	0
	120	0	48.55	8.76	0	0.15	0	V	0.388	0	0	0
	121	0	48.71	8.76	0	0.15	0	S	0.411	0	0	0
	122	0	48.99	8.76	0	0.28	0	G	0.411	0.015	0	0
	123	0	49.68	8.76	0	0.69	0	L	0.398	0.015	0	0
	124	0	49.96	8.76	0	0.28	0	V	0.403	0.015	0	0
	125	0	50.12	8.76	0	0.15	0	G	0.404	0.015	0	0
	126	0	50.73	8.76	0	0.62	0	A	0.404	0.015	0	0
	127	0	51.14	8.76	0	0.41	0	A	0.368	0.092	0	0
	128	0	51.79	8.76	0	0.65	0	V	0.371	0.092	0	0
	129	0	52.29	8.76	0	0.5	0	G	0.306	0.092	0	0
	130	0	52.68	8.76	0	0.38	0	S	0.294	0.092	0	0
	131	0	52.83	8.91	0	0.15	0.15	I	0.297	0.143	0	0
	132	0	52.99	8.91	0	0.15	0	G	0.349	0.128	0	0
	133	0	53.73	8.91	0	0.74	0	L	0.394	0.128	0	0
	134	0	54.03	8.91	0	0.29	0	G	0.349	0.128	0	0
	135	0	54.18	8.91	0	0.15	0	K	0.366	0.128	0	0
	136	0	54.44	9.68	0	0.26	0.77	I	0.389	0.128	0	0
	137	0	54.87	9.68	0	0.44	0	L	0.413	0.051	0	0
	138	0	54.87	9.68	0	0	0	V	0.384	0.051	0	0
	139	0	55.26	9.68	0	0.38	0	D	0.399	0.051	0	0
	140	0	55.67	10.19	0	0.41	0.51	V	0.399	0.051	0	0
	141	0	56.33	10.19	0	0.67	0	L	0.358	0	0	0
	142	0	56.94	10.19	0	0.6	0	A	0.342	0	0	0
	143	0	57.23	10.19	0	0.29	0	G	0.282	0	0	0
	144	0	57.69	10.19	0	0.46	0	Y	0.313	0	0	0
	145	0	58.08	10.19	0	0.38	0	G	0.318	0	0	0
	146	0	58.58	10.19	0	0.5	0	A	0.331	0	0	0
	147	0	58.73	10.19	0	0.15	0	G	0.296	0	0	0
	148	0	58.88	10.19	0	0.15	0	I	0.281	0.015	0	0
	149	0	59.27	10.19	0	0.38	0	S	0.266	0.015	0	0
	150	0	59.27	10.19	0	0	0	G	0.274	0.092	0	0
	151	0	59.78	10.19	0	0.51	0	A	0.274	0.092	0	0
	152	0	59.78	10.19	0	0	0	L	0.223	0.092	0	0
	153	0	60.38	10.19	0	0.6	0	V	0.223	0.092	0	0
	154	0	60.9	10.19	0	0.51	0	A	0.178	0.092	0	0
	155	0	61.41	10.19	0	0.51	0	F	0.177	0.107	0	0
	156	0	61.56	10.19	0	0.15	0	K	0.152	0.174	0	0
	157	0	61.56	10.35	0	0	0.15	I	0.191	0.174	0	0
	158	0	61.56	10.35	0	0	0	M	0.237	0.159	0	0
	159	0	62.03	11.12	0	0.46	0.77	S	0.275	0.159	0	0
	160	0	62.03	11.12	0	0	0	G	0.229	0.082	0	0
	161	0	62.03	11.12	0	0	0	E	0.279	0.113	0	0
	162	0	62.03	11.12	0	0	0	K	0.33	0.113	0	0
	163	0	62.18	11.12	0	0.15	0	P	0.385	0.117	0	0
	164	0	62.68	11.27	0	0.5	0.15	S	0.399	0.117	0	0
	165	0	62.94	11.94	0	0.26	0.67	V	0.395	0.102	0.666	-0.666
	166	0	63.47	11.94	0	0.54	0	E	0.437	0.081	0	0
	167	0	63.94	11.94	0	0.46	0	D	0.429	0.081	0	0
	168	0	64.32	11.94	0	0.38	0	V	0.447	0.085	0	0
	169	1	64.32	11.94	1	0	0	-	0.438	0.085	0	0
	170	1	64.82	12.24	0	0.5	0.31	V	0.488	0.085	0	0
	171	1	65.33	12.24	0	0.51	0	N	0.494	0.054	0	0
	172	1	65.88	12.28	0	0.55	0.04	L	0.494	0.054	0	0
	173	1	66.18	12.28	0	0.29	0	L	0.513	0.056	0	0
	174	1	66.64	12.28	0	0.46	0	P	0.538	0.056	0	0
	175	1	67.32	12.74	0	0.68	0.46	A	0.507	0.056	0.617	-0.617
	176	1	67.78	12.74	0	0.46	0	I	0.48	0.01	0	0
	177	1	68.42	12.78	0	0.64	0.04	L	0.449	0.01	0	0
	178	1	68.72	12.78	0	0.29	0	S	0.4	0.006	0	0
	179	1	69.22	12.78	0	0.5	0	P	0.417	0.006	0	0
	180	1	69.78	12.78	0	0.56	0	G	0.405	0.006	0	0
	181	1	70.29	12.78	0	0.51	0	A	0.39	0.006	0	0
	182	1	71.04	12.85	0	0.74	0.06	L	0.39	0.006	0	0
	183	1	71.58	12.85	0	0.54	0	V	0.36	0	0	0
	184	1	71.73	12.85	0	0.15	0	V	0.306	0	0	0
	185	1	72.14	12.85	0	0.41	0	G	0.319	0	0	0
	186	1	72.29	12.85	0	0.15	0	V	0.278	0	0	0
	187	1	72.45	12.85	0	0.15	0	I	0.301	0	0	0
	188	1	72.91	12.85	0	0.46	0	C	0.36	0	0	0
	189	1	73.29	12.85	0	0.38	0	A	0.342	0.051	0	0
	190	1	73.71	12.85	0	0.41	0	A	0.342	0.051	0	0
	191	1	74.22	12.85	0	0.51	0	I	0.355	0.051	0	0
	192	1	74.65	12.85	0	0.44	0	L	0.345	0.051	0	0
	193	1	74.65	12.85	0	0	0	R	0.33	0.051	0	0
	194	1	74.94	12.85	0	0.28	0	R	0.345	0.051	0	0
	195	1	74.94	12.85	0	0	0	H	0.368	0.051	0	0
	196	1	75.32	12.85	0	0.38	0	V	0.368	0.051	0	0
	197	1	76.06	12.85	0	0.74	0	G	0.33	0.051	0	0
	198	1	76.35	13.36	0	0.28	0.51	Q	0.302	0.051	0.666	-0.666
	199	1	76.73	13.36	0	0.38	0	G	0.32	0	0	0
	200	1	77.27	13.36	0	0.54	0	E	0.347	0	0	0
	201	1	77.68	13.36	0	0.41	0	G	0.349	0	0	0
	202	1	77.97	13.36	0	0.29	0	A	0.308	0	0	0
	203	1	78.13	13.36	0	0.15	0	V	0.33	0	0	0
	204	1	78.64	13.36	0	0.51	0	Q	0.365	0	0	0
	205	1	78.64	13.36	0	0	0	W	0.329	0	0	0
	206	1	78.64	13.36	0	0	0	M	0.357	0	0	0
	207	1	79.1	13.36	0	0.46	0	N	0.385	0	0	0
	208	1	79.56	13.36	0	0.46	0	R	0.354	0	0	0
	209	1	80.22	13.36	0	0.65	0	L	0.336	0	0	0
	210	1	80.78	13.36	0	0.56	0	I	0.317	0	0	0
	211	1	80.78	13.36	0	0	0	A	0.261	0	0	0
	212	1	81.29	13.36	0	0.51	0	F	0.328	0	0	0
	213	1	81.79	13.36	0	0.5	0	A	0.327	0	0	0
	214	1	81.95	13.36	0	0.15	0	S	0.292	0	0	0
	215	1	82.23	13.36	0	0.28	0	R	0.277	0	0	0
	216	1	82.51	13.36	0	0.28	0	G	0.249	0	0	0
	217	1	82.67	13.36	0	0.15	0	N	0.221	0.067	0	0
	218	1	82.95	13.36	0	0.28	0	H	0.221	0.067	0	0
	219	1	83.41	13.36	0	0.46	0	V	0.249	0.067	0	0
	220	1	83.41	13.36	0	0	0	A	0.241	0.067	0	0
	221	1	84.08	13.36	0	0.67	0	P	0.278	0.067	0	0
	222	1	84.58	13.36	0	0.5	0	T	0.226	0.067	0	0
	223	1	84.73	13.36	0	0.15	0	H	0.176	0.082	0	0
	224	1	84.73	13.36	0	0	0	Y	0.22	0.082	0	0
	225	1	84.73	13.36	0	0	0	V	0.261	0.082	0	0
	226	1	84.73	14.03	0	0	0.67	A	0.307	0.082	0.859	-0.859
	227	1	84.88	14.03	0	0.15	0	E	0.361	0.015	0	0
	228	1	85.45	14.03	0	0.56	0	S	0.392	0.043	0	0
	229	1	85.83	14.03	0	0.38	0	D	0.38	0.056	0	0
	230	1	86.21	14.03	0	0.37	0	A	0.38	0.084	0	0
	231	1	86.36	14.03	0	0.15	0	S	0.412	0.084	0	0
	232	1	86.36	14.18	0	0	0.15	Q	0.435	0.084	0.271	-0.271
	233	1	86.95	14.18	0	0.59	0	R	0.507	0.069	0	0
	234	1	87.36	14.18	0	0.41	0	V	0.498	0.069	0	0
	235	1	87.82	14.18	0	0.46	0	T	0.511	0.069	0	0
	236	1	88.36	14.18	0	0.54	0	Q	0.465	0.069	0	0
	237	1	88.82	14.46	0	0.46	0.28	L	0.503	0.069	0.429	-0.429
	238	1	89.26	14.59	0	0.44	0.13	L	0.485	0.041	0	0
	239	1	89.64	14.87	0	0.38	0.28	G	0.495	0.028	0.429	-0.429
	240	1	90.33	14.87	0	0.69	0	S	0.472	0	0	0
	241	1	90.72	14.87	0	0.38	0	L	0.449	0	0	0
	242	1	91.44	14.87	0	0.72	0	T	0.462	0	0	0
	243	1	91.94	14.87	0	0.5	0	I	0.434	0.109	0	0
	244	1	92.47	14.87	0	0.54	0	T	0.384	0.109	0	0
	245	1	92.47	14.87	0	0	0	S	0.386	0.109	0	0
	246	1	93.4	14.87	0	0.92	0	L	0.415	0.109	0	0
	247	1	93.68	14.87	0	0.28	0	L	0.377	0.109	0	0
	248	1	94.22	14.87	0	0.54	0	R	0.387	0.109	0	0
	249	1	94.37	14.87	0	0.15	0	R	0.333	0.109	0	0
	250	1	94.83	14.87	0	0.46	0	L	0.383	0.109	0	0
	251	1	95.35	14.87	0	0.51	0	H	0.365	0.16	0	0
	252	1	95.78	15.96	0	0.44	1.09	Q	0.329	0.16	0.79	-0.79
	253	1	95.78	15.96	0	0	0	W	0.313	0.051	0	0
	254	1	96.35	15.96	0	0.56	0	I	0.347777778	0.056666667	0	0
	255	1	96.64	15.96	0	0.29	0	T	0.32125	0.06375	0	0
	256	1	97.18	15.96	0	0.54	0	E	0.325714286	0.072857143	0	0
	257	1	97.56	15.96	0	0.38	0	D	0.29	0.085	0	0
	258	1	97.56	15.96	0	0	0	C	0.272	0.102	0	0
	259	1	98.22	15.96	0	0.65	0	P	0.34	0.1275	0	0
	260	1	98.5	16.47	0	0.28	0.51	V	0.236666667	0.17	0	0
	261	1	98.65	16.47	0	0.15	0	P	0.215	0	0	0
	262	1	98.94	16.47	0	0.28	0	C	0.28	0	0	0



Questions or comments? Contact us at hcv-info@lanl.gov