HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	54						
#k	The	average	behavior	for	66	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hb
	1	0	0	0	0	0	0	S	0.299	0.124	0	0
	2	0	0	0.3	0	0	0.3	T	0.329	0.124	0.451	-0.451
	3	0	0	0.3	0	0	0	W	0.373	0.094	0	0
	4	0	0.32	0.3	0	0.32	0	V	0.418	0.142	0	0
	5	0	0.7	0.55	0	0.38	0.24	I	0.439	0.159	0.287	-0.287
	6	0	1.11	0.86	0	0.41	0.32	L	0.418	0.135	0.566	-0.566
	7	0	1.55	0.86	0	0.44	0	G	0.394	0.103	0	0
	8	0	1.86	0.86	0	0.32	0	G	0.38	0.103	0	0
	9	0	2.48	0.86	0	0.62	0	V	0.365	0.103	0	0
	10	0	2.98	1.24	0	0.5	0.38	L	0.333	0.103	0.287	-0.287
	11	0	3.29	1.24	0	0.3	0	A	0.328	0.065	0	0
	12	0	3.73	1.24	0	0.44	0	A	0.339	0.065	0	0
	13	0	4.18	1.73	0	0.45	0.48	L	0.336	0.095	0.637	-0.637
	14	0	4.71	1.89	0	0.53	0.17	A	0.321	0.047	0.287	-0.287
	15	0	4.88	1.89	0	0.17	0	A	0.33	0.03	0	0
	16	0	5.05	1.89	0	0.17	0	Y	0.375	0.03	0	0
	17	0	5.35	1.89	0	0.3	0	C	0.382	0.054	0	0
	18	0	5.52	1.89	0	0.17	0	L	0.42	0.054	0	0
	19	0	5.82	1.89	0	0.3	0	S	0.433	0.054	0	0
	20	0	6.27	1.89	0	0.45	0	V	0.458	0.079	0	0
	21	0	6.68	1.89	0	0.41	0	G	0.43	0.096	0	0
	22	0	7.09	2.2	0	0.41	0.3	C	0.436	0.096	0.451	-0.451
	23	0	7.39	2.2	0	0.3	0	V	0.436	0.083	0	0
	24	0	8.02	2.2	0	0.62	0	V	0.438	0.1	0	0
	25	0	8.64	2.2	0	0.62	0	I	0.406	0.1	0	0
	26	0	8.88	2.44	0	0.24	0.24	I	0.406	0.1	0.287	-0.287
	27	0	9.56	2.44	0	0.68	0	G	0.426	0.076	0	0
	28	0	9.86	2.44	0	0.3	0	H	0.375	0.093	0	0
	29	0	10.42	2.69	0	0.55	0.25	I	0.386	0.11	0.287	-0.287
	30	0	10.58	2.86	0	0.17	0.17	E	0.363	0.085	0.287	-0.287
	31	0	11.05	2.86	0	0.47	0	L	0.363	0.068	0	0
	32	0	11.46	3.02	0	0.41	0.17	G	0.346	0.085	0.287	-0.287
	33	0	11.78	3.19	0	0.32	0.17	V	0.335	0.098	0.287	-0.287
	34	0	12.08	3.19	0	0.3	0	K	0.333	0.081	0	0
	35	0	12.7	3.19	0	0.62	0	P	0.382	0.081	0	0
	36	0	13.14	3.19	0	0.44	0	A	0.368	0.081	0	0
	37	0	13.31	3.36	0	0.17	0.17	L	0.341	0.081	0.287	-0.287
	38	0	13.72	3.52	0	0.41	0.17	I	0.354	0.064	0.287	-0.287
	39	0	14.04	3.52	0	0.32	0	P	0.354	0.064	0	0
	40	0	14.2	3.52	0	0.17	0	D	0.352	0.064	0	0
	41	0	14.51	3.69	0	0.3	0.17	K	0.335	0.064	0	0
	42	0	14.81	3.99	0	0.3	0.3	Q	0.305	0.047	0.451	-0.451
	43	0	15.11	3.99	0	0.3	0	V	0.323	0.017	0	0
	44	0	15.9	3.99	0	0.79	0	L	0.334	0.017	0	0
	45	0	16.39	3.99	0	0.48	0	Y	0.285	0.017	0	0
	46	0	16.55	3.99	0	0.17	0	Q	0.263333333	0.018888889	0	0
	47	0	16.86	3.99	0	0.3	0	Q	0.275	0.02125	0	0
	48	0	17.27	4.16	0	0.41	0.17	F	0.271428571	0.024285714	0.287	-0.287
	49	0	17.57	4.16	0	0.3	0	D	0.248333333	0	0	0
	50	0	17.57	4.16	0	0	0	E	0.238	0	0	0
	51	0	17.57	4.16	0	0	0	M	0.2975	0	0	0
	52	0	18.05	4.16	0	0.48	0	E	0.396666667	0	0	0
	53	0	18.46	4.16	0	0.41	0	E	0.355	0	0	0
	54	0	18.77	4.16	0	0.3	0	C	0.3	0	0	0



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