HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	54						
#k	The	average	behavior	for	136	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hb
	1	0	0.12	0	0	0.12	0	S	0.399	0.038	0	0
	2	0	0.6	0.22	0	0.49	0.22	T	0.441	0.038	0.362	-0.362
	3	0	0.6	0.34	0	0	0.12	W	0.414	0.016	0	0
	4	0	0.83	0.34	0	0.23	0	V	0.453	0.017	0	0
	5	0	1.68	0.38	0	0.85	0.04	L	0.475	0.017	0	0
	6	0	2.1	0.38	0	0.41	0	A	0.445	0.013	0	0
	7	0	2.21	0.38	0	0.12	0	G	0.442	0.013	0	0
	8	0	2.7	0.38	0	0.49	0	G	0.442	0.013	0	0
	9	0	3.08	0.38	0	0.38	0	V	0.456	0.017	0	0
	10	0	3.98	0.38	0	0.9	0	L	0.441	0.017	0	0
	11	0	4.52	0.38	0	0.54	0	A	0.4	0.017	0	0
	12	0	4.74	0.38	0	0.22	0	A	0.393	0.017	0	0
	13	0	5.14	0.51	0	0.39	0.13	V	0.42	0.017	0.224	-0.224
	14	0	5.58	0.51	0	0.45	0	A	0.413	0.036	0	0
	15	0	6.14	0.51	0	0.55	0	A	0.368	0.099	0	0
	16	0	6.52	0.51	0	0.38	0	Y	0.313	0.123	0	0
	17	0	6.64	0.51	0	0.12	0	C	0.313	0.123	0	0
	18	0	7.27	0.55	0	0.63	0.04	L	0.313	0.123	0	0
	19	0	7.5	0.55	0	0.23	0	A	0.302	0.119	0	0
	20	0	7.98	0.55	0	0.49	0	T	0.315	0.166	0	0
	21	0	8.45	0.55	0	0.47	0	G	0.304	0.178	0	0
	22	0	8.94	0.55	0	0.49	0	C	0.292	0.238	0	0
	23	0	9.26	0.87	0	0.32	0.32	V	0.281	0.238	0.466	-0.466
	24	0	9.26	1.5	0	0	0.63	S	0.273	0.275	0.362	-0.362
	25	0	9.26	1.74	0	0	0.24	I	0.326	0.269	0.224	-0.224
	26	0	9.64	1.74	0	0.38	0	I	0.382	0.321	0	0
	27	0	9.76	1.74	0	0.12	0	G	0.384	0.343	0	0
	28	0	10.28	1.74	0	0.52	0	R	0.419	0.356	0	0
	29	0	10.64	2.2	0	0.36	0.47	I	0.438	0.356	0.578	-0.578
	30	0	11.02	2.32	0	0.38	0.12	H	0.457	0.309	0	0
	31	0	11.36	2.92	0	0.35	0.6	V	0.45	0.297	1.206	-1.206
	32	0	11.75	2.92	0	0.38	0	N	0.427	0.237	0	0
	33	0	11.99	3.61	0	0.24	0.69	Q	0.433	0.237	0.678	-0.678
	34	0	12.52	4.18	0	0.53	0.57	K	0.409	0.199	0.466	-0.466
	35	0	13.08	4.94	0	0.56	0.76	T	0.432	0.168	1.003	-1.003
	36	0	13.48	5.16	0	0.4	0.22	I	0.388	0.092	0.362	-0.362
	37	0	13.95	5.29	0	0.47	0.13	I	0.348	0.07	0.224	-0.224
	38	0	14.66	5.29	0	0.71	0	A	0.358	0.057	0	0
	39	0	15.21	5.29	0	0.55	0	P	0.318	0.057	0	0
	40	0	15.52	5.29	0	0.31	0	D	0.284	0.057	0	0
	41	0	15.64	5.29	0	0.12	0	K	0.253	0.057	0	0
	42	0	16.08	5.29	0	0.44	0	E	0.241	0.057	0	0
	43	0	16.08	5.6	0	0	0.31	V	0.235	0.057	0.466	-0.466
	44	0	16.84	5.86	0	0.76	0.26	L	0.247	0.026	0	0
	45	0	16.96	5.86	0	0.12	0	Y	0.22	0	0	0
	46	0	16.96	5.86	0	0	0	E	0.231111111	0	0	0
	47	0	17.53	5.86	0	0.57	0	A	0.26	0	0	0
	48	0	17.84	5.86	0	0.31	0	F	0.215714286	0	0	0
	49	0	18.04	5.86	0	0.21	0	D	0.2	0	0	0
	50	0	18.04	5.86	0	0	0	E	0.198	0	0	0
	51	0	18.04	5.86	0	0	0	M	0.2475	0	0	0
	52	0	18.43	5.86	0	0.38	0	E	0.33	0	0	0
	53	0	18.54	5.86	0	0.12	0	E	0.305	0	0	0
	54	0	19.03	5.86	0	0.49	0	C	0.49	0	0	0



Questions or comments? Contact us at hcv-info@lanl.gov