HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	54						
#k	The	average	behavior	for	28	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hq
	1	0	0.43	0	0	0.43	0	S	0.168	0	0	0
	2	0	0.68	0	0	0.25	0	T	0.171	0	0	0
	3	0	0.68	0	0	0	0	W	0.146	0.05	0	0
	4	0	0.68	0	0	0	0	V	0.2	0.05	0	0
	5	0	0.68	0	0	0	0	L	0.2	0.05	0	0
	6	0	1.11	0	0	0.43	0	V	0.225	0.05	0	0
	7	0	1.11	0	0	0	0	G	0.207	0.05	0	0
	8	0	1.11	0	0	0	0	G	0.207	0.05	0	0
	9	0	1.68	0	0	0.57	0	V	0.261	0.05	0	0
	10	0	1.68	0	0	0	0	L	0.283	0.05	0	0
	11	0	2.14	0	0	0.46	0	A	0.283	0.05	0	0
	12	0	2.14	0.5	0	0	0.5	A	0.237	0.05	0.377	-0.377
	13	0	2.68	0.5	0	0.54	0	L	0.262	0	0	0
	14	0	2.68	0.5	0	0	0	A	0.233	0	0	0
	15	0	2.93	0.5	0	0.25	0	A	0.233	0	0	0
	16	0	3.18	0.5	0	0.25	0	Y	0.208	0	0	0
	17	0	3.18	0.5	0	0	0	C	0.226	0	0	0
	18	0	3.71	0.5	0	0.54	0	L	0.226	0	0	0
	19	0	4.5	0.5	0	0.79	0	S	0.197	0	0	0
	20	0	4.5	0.5	0	0	0	T	0.173	0.073	0	0
	21	0	4.5	0.5	0	0	0	G	0.227	0.116	0	0
	22	0	4.75	0.5	0	0.25	0	C	0.227	0.116	0	0
	23	0	5	0.5	0	0.25	0	V	0.227	0.116	0	0
	24	0	5	0.5	0	0	0	V	0.227	0.116	0	0
	25	0	5	0.5	0	0	0	I	0.227	0.159	0	0
	26	0	5.43	0.5	0	0.43	0	V	0.227	0.159	0	0
	27	0	5.43	0.5	0	0	0	G	0.23	0.159	0	0
	28	0	5.68	0.5	0	0.25	0	R	0.273	0.159	0	0
	29	0	6.23	1.23	0	0.55	0.73	V	0.26	0.197	0.9	-0.9
	30	0	6.77	1.66	0	0.54	0.43	I	0.273	0.124	0.562	-0.562
	31	0	6.77	1.66	0	0	0	L	0.219	0.081	0	0
	32	0	7.02	1.66	0	0.25	0	S	0.219	0.081	0	0
	33	0	7.27	1.66	0	0.25	0	G	0.237	0.081	0	0
	34	0	7.27	2.09	0	0	0.43	R	0.255	0.081	0	0
	35	0	7.27	2.09	0	0	0	P	0.28	0.063	0	0
	36	0	7.73	2.09	0	0.46	0	A	0.28	0.063	0	0
	37	0	8.16	2.09	0	0.43	0	I	0.259	0.106	0	0
	38	0	8.29	2.46	0	0.12	0.38	V	0.259	0.106	0.377	-0.377
	39	0	8.96	2.46	0	0.68	0	P	0.247	0.068	0	0
	40	0	8.96	2.46	0	0	0	D	0.179	0.068	0	0
	41	0	8.96	2.46	0	0	0	R	0.179	0.068	0	0
	42	0	9.39	2.46	0	0.43	0	E	0.179	0.068	0	0
	43	0	9.82	2.46	0	0.43	0	V	0.136	0.068	0	0
	44	0	10.07	2.71	0	0.25	0.25	L	0.093	0.068	0	0
	45	0	10.07	2.71	0	0	0	Y	0.093	0.043	0	0
	46	0	10.32	3.14	0	0.25	0.43	R	0.103333333	0.047777778	0.562	-0.562
	47	0	10.75	3.14	0	0.43	0	E	0.085	0	0	0
	48	0	10.75	3.14	0	0	0	F	0.035714286	0	0	0
	49	0	10.75	3.14	0	0	0	D	0.041666667	0	0	0
	50	0	10.75	3.14	0	0	0	E	0.05	0	0	0
	51	0	10.75	3.14	0	0	0	M	0.0625	0	0	0
	52	0	10.75	3.14	0	0	0	E	0.083333333	0	0	0
	53	0	10.75	3.14	0	0	0	E	0.125	0	0	0
	54	0	11	3.14	0	0.25	0	C	0.25	0	0	0



Questions or comments? Contact us at hcv-info@lanl.gov