HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	192						
#k	The	average	behavior	for	105	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hq
	1	0	0.74	0.7	0	0.74	0.7	V	0.5	0.73	1.044	-1.044
	2	0	1.18	1.88	0	0.43	1.18	H	0.457	0.673	1.245	-1.245
	3	0	1.69	2.59	0	0.51	0.7	Y	0.486	0.555	0.628	-0.628
	4	0	2.14	3.84	0	0.45	1.25	R	0.469	0.485	1.402	-1.402
	5	0	2.68	3.84	0	0.53	0	N	0.424	0.36	0	0
	6	0	3.18	5.42	0	0.5	1.58	A	0.422	0.36	1.657	-1.657
	7	0	3.59	6.47	0	0.42	1.06	S	0.414	0.202	0	0
	8	0	4.24	6.64	0	0.64	0.17	G	0.442	0.13	0.245	-0.245
	9	0	4.89	7.3	0	0.65	0.66	I	0.42	0.14	0.853	-0.853
	10	0	5.02	7.3	0	0.13	0	Y	0.402	0.197	0	0
	11	0	5.34	7.43	0	0.31	0.13	H	0.414	0.197	0.245	-0.245
	12	0	6.06	7.43	0	0.72	0	L	0.416	0.197	0	0
	13	0	6.4	7.43	0	0.34	0	T	0.402	0.215	0	0
	14	0	6.4	7.43	0	0	0	N	0.427	0.32	0	0
	15	0	6.92	7.43	0	0.51	0	D	0.461	0.32	0	0
	16	0	7.34	7.43	0	0.42	0	C	0.457	0.32	0	0
	17	0	8.03	7.78	0	0.7	0.34	P	0.446	0.392	0.5	-0.5
	18	0	8.45	8.04	0	0.42	0.27	N	0.437	0.465	0.245	-0.245
	19	0	8.92	9.27	0	0.47	1.23	S	0.415	0.527	0.393	-0.393
	20	0	9.17	9.27	0	0.25	0	S	0.414	0.404	0	0
	21	0	9.5	9.41	0	0.33	0.13	I	0.456	0.457	0.245	-0.245
	22	0	10.08	9.58	0	0.58	0.18	V	0.474	0.444	0.245	-0.245
	23	0	10.67	10.63	0	0.59	1.05	Y	0.494	0.48	0.928	-0.928
	24	0	11.01	10.63	0	0.34	0	E	0.512	0.388	0	0
	25	0	11.48	10.63	0	0.47	0	A	0.547	0.388	0	0
	26	0	11.79	11.35	0	0.31	0.72	E	0.551	0.388	0.853	-0.853
	27	0	12.4	12.42	0	0.61	1.07	S	0.572	0.363	1.395	-1.395
	28	0	12.6	13.31	0	0.2	0.89	M	0.59	0.256	1.338	-1.338
	29	0	13.06	13.31	0	0.46	0	I	0.604	0.167	0	0
	30	0	13.73	13.84	0	0.67	0.53	L	0.601	0.259	0.5	-0.5
	31	0	14.24	13.84	0	0.51	0	H	0.571	0.278	0	0
	32	0	15.02	14.38	0	0.78	0.54	L	0.589	0.395	0.245	-0.245
	33	0	15.79	14.51	0	0.77	0.13	P	0.583	0.383	0.245	-0.245
	34	0	16.48	14.51	0	0.69	0	G	0.548	0.383	0	0
	35	0	16.99	14.51	0	0.51	0	C	0.51	0.533	0	0
	36	0	17.51	14.98	0	0.52	0.47	V	0.537	0.533	0.5	-0.5
	37	0	18.3	14.98	0	0.79	0	P	0.553	0.614	0	0
	38	0	18.64	14.98	0	0.34	0	C	0.527	0.614	0	0
	39	0	19.07	15.9	0	0.43	0.92	T	0.493	0.614	0.97	-0.97
	40	0	19.44	16.62	0	0.37	0.72	K	0.508	0.669	1.063	-1.063
	41	0	20.13	17.79	0	0.69	1.17	T	0.537	0.679	1.362	-1.362
	42	0	20.85	18.21	0	0.72	0.42	G	0.544	0.61	0.628	-0.628
	43	0	21.27	18.34	0	0.42	0.13	N	0.549	0.637	0.245	-0.245
	44	0	21.58	19.84	0	0.31	1.5	T	0.558	0.651	1.859	-1.859
	45	0	22.36	19.84	0	0.78	0	S	0.59	0.501	0	0
	46	0	23.04	21.12	0	0.68	1.28	Q	0.601	0.527	1.211	-1.211
	47	0	23.57	21.12	0	0.53	0	C	0.599	0.399	0	0
	48	0	23.57	21.12	0	0	0	W	0.604	0.467	0	0
	49	0	24.15	22.59	0	0.58	1.47	I	0.672	0.503	1.617	-1.617
	50	0	24.81	23.41	0	0.66	0.82	P	0.665	0.356	1.211	-1.211
	51	0	25.57	23.89	0	0.76	0.48	V	0.673	0.316	0.637	-0.637
	52	0	26.34	24.57	0	0.77	0.69	A	0.67	0.31	1.055	-1.055
	53	0	26.86	24.84	0	0.51	0.27	P	0.622	0.343	0.485	-0.485
	54	0	27.48	24.84	0	0.63	0	T	0.643	0.316	0	0
	55	0	28.38	25.1	0	0.89	0.26	L	0.656	0.411	0.245	-0.245
	56	0	29.03	25.1	0	0.66	0	A	0.614	0.524	0	0
	57	0	29.62	25.78	0	0.58	0.68	V	0.59	0.524	0.953	-0.953
	58	0	30.29	26.15	0	0.68	0.36	P	0.557	0.456	0.628	-0.628
	59	0	30.81	26.15	0	0.51	0	N	0.502	0.42	0	0
	60	0	31.55	26.56	0	0.74	0.42	A	0.514	0.544	0.58	-0.58
	61	0	32.28	26.98	0	0.73	0.42	T	0.488	0.515	0.58	-0.58
	62	0	32.58	28	0	0.29	1.02	V	0.45	0.508	1.02	-1.02
	63	0	33.3	28	0	0.72	0	P	0.469	0.406	0	0
	64	0	34.06	28.95	0	0.76	0.95	V	0.456	0.406	1.27	-1.27
	65	0	34.53	30.34	0	0.47	1.39	K	0.433	0.397	1.512	-1.512
	66	0	34.95	30.34	0	0.42	0	G	0.46	0.3	0	0
	67	0	35.19	30.34	0	0.25	0	F	0.471	0.3	0	0
	68	0	35.33	30.34	0	0.13	0	R	0.52	0.334	0	0
	69	0	35.96	31.58	0	0.63	1.24	S	0.584	0.334	1.268	-1.268
	70	0	36.43	31.71	0	0.48	0.13	H	0.594	0.252	0.245	-0.245
	71	0	36.78	32.06	0	0.35	0.35	V	0.597	0.323	0.393	-0.393
	72	0	37.26	32.06	0	0.48	0	D	0.615	0.288	0	0
	73	0	37.85	32.06	0	0.59	0	L	0.634	0.288	0	0
	74	0	38.39	32.92	0	0.53	0.86	L	0.639	0.33	1.02	-1.02
	75	0	39.13	33.34	0	0.74	0.42	V	0.607	0.308	0.58	-0.58
	76	0	39.66	33.34	0	0.53	0	G	0.584	0.266	0	0
	77	0	40.4	33.68	0	0.74	0.34	S	0.578	0.348	0.5	-0.5
	78	0	41.18	33.68	0	0.77	0	A	0.58	0.314	0	0
	79	0	41.91	34.1	0	0.73	0.42	A	0.556	0.314	0.58	-0.58
	80	0	42.42	34.94	0	0.51	0.84	L	0.575	0.307	1.252	-1.252
	81	0	42.96	34.94	0	0.53	0	C	0.575	0.223	0	0
	82	0	43.62	34.94	0	0.67	0	S	0.59	0.223	0	0
	83	0	44.26	35.36	0	0.64	0.42	A	0.585	0.321	0.58	-0.58
	84	0	44.48	36	0	0.21	0.64	L	0.588	0.34	0.673	-0.673
	85	0	44.99	36	0	0.51	0	Y	0.62	0.276	0	0
	86	0	45.47	36.82	0	0.47	0.82	I	0.659	0.282	0.857	-0.857
	87	0	46.23	36.82	0	0.76	0	G	0.682	0.255	0	0
	88	0	46.76	36.82	0	0.53	0	D	0.671	0.255	0	0
	89	0	47.68	37.17	0	0.92	0.35	L	0.671	0.255	0.245	-0.245
	90	0	48.2	37.17	0	0.51	0	C	0.659	0.255	0	0
	91	0	48.87	37.17	0	0.68	0	G	0.656	0.294	0	0
	92	0	49.49	38.15	0	0.62	0.98	G	0.653	0.32	0.853	-0.853
	93	0	50.16	38.76	0	0.67	0.61	V	0.633	0.267	0.928	-0.928
	94	0	50.69	38.76	0	0.53	0	F	0.63	0.294	0	0
	95	0	51.6	38.82	0	0.9	0.06	L	0.633	0.294	0	0
	96	0	52.29	39.37	0	0.7	0.55	V	0.598	0.375	0.803	-0.803
	97	0	52.94	39.37	0	0.65	0	G	0.577	0.488	0	0
	98	0	53.47	39.37	0	0.53	0	Q	0.554	0.488	0	0
	99	0	54.27	39.72	0	0.8	0.35	L	0.531	0.664	0.485	-0.485
	100	0	54.75	40.11	0	0.48	0.39	F	0.511	0.712	0.485	-0.485
	101	0	55.39	40.37	0	0.65	0.26	T	0.526	0.725	0.485	-0.485
	102	0	55.81	40.82	0	0.42	0.45	L	0.512	0.699	0.73	-0.73
	103	0	56.46	41.7	0	0.64	0.88	R	0.493	0.696	1.02	-1.02
	104	0	57.02	41.7	0	0.56	0	P	0.471	0.608	0	0
	105	0	57.57	42.56	0	0.55	0.87	R	0.463	0.608	0.5	-0.5
	106	0	58.07	44.24	0	0.49	1.68	Y	0.461	0.521	1.749	-1.749
	107	0	58.48	44.24	0	0.42	0	H	0.448	0.353	0	0
	108	0	58.79	46	0	0.3	1.76	T	0.455	0.384	1.432	-1.432
	109	0	59.39	46.84	0	0.6	0.83	T	0.473	0.208	0.861	-0.861
	110	0	60.02	47.35	0	0.63	0.52	V	0.491	0.193	0.393	-0.393
	111	0	60.53	47.35	0	0.51	0	Q	0.481	0.141	0	0
	112	0	60.76	47.77	0	0.23	0.42	E	0.478	0.154	0.58	-0.58
	113	0	61.18	47.77	0	0.42	0	C	0.511	0.165	0	0
	114	0	61.66	47.77	0	0.48	0	N	0.535	0.165	0	0
	115	0	62.19	47.77	0	0.53	0	C	0.555	0.165	0	0
	116	0	62.55	47.77	0	0.36	0	S	0.527	0.165	0	0
	117	0	63.04	48.08	0	0.49	0.31	I	0.527	0.192	0.393	-0.393
	118	0	63.52	48.08	0	0.48	0	Y	0.478	0.161	0	0
	119	0	64.3	48.77	0	0.78	0.68	T	0.499	0.161	0.765	-0.765
	120	0	64.83	48.77	0	0.53	0	G	0.421	0.093	0	0
	121	0	65.31	48.9	0	0.48	0.13	H	0.41	0.093	0.245	-0.245
	122	0	65.87	49.43	0	0.56	0.53	I	0.362	0.08	0.691	-0.691
	123	0	66.53	49.43	0	0.66	0	T	0.306	0.027	0	0
	124	0	67.2	49.43	0	0.68	0	G	0.252	0.106	0	0
	125	0	67.45	49.43	0	0.25	0	H	0.232	0.106	0	0
	126	0	67.81	49.71	0	0.36	0.27	R	0.207	0.106	0.245	-0.245
	127	0	67.81	49.71	0	0	0	M	0.249	0.079	0	0
	128	0	68.49	49.71	0	0.69	0	A	0.317	0.079	0	0
	129	0	68.49	49.71	0	0	0	W	0.319	0.079	0	0
	130	0	68.91	49.71	0	0.42	0	D	0.383	0.187	0	0
	131	0	68.91	49.71	0	0	0	M	0.404	0.258	0	0
	132	0	68.91	49.71	0	0	0	M	0.465	0.368	0	0
	133	0	69.04	50.5	0	0.12	0.79	Q	0.535	0.433	0.765	-0.765
	134	0	69.51	50.5	0	0.48	0	N	0.592	0.46	0	0
	135	0	69.51	50.5	0	0	0	W	0.609	0.46	0	0
	136	0	70.29	50.5	0	0.78	0	S	0.659	0.589	0	0
	137	0	70.97	50.5	0	0.68	0	P	0.641	0.707	0	0
	138	0	71.69	50.5	0	0.71	0	T	0.63	0.734	0	0
	139	0	72.33	51.58	0	0.64	1.08	M	0.642	0.745	1.211	-1.211
	140	0	72.95	52.29	0	0.63	0.71	A	0.627	0.701	0.988	-0.988
	141	0	73.56	53.39	0	0.61	1.1	Y	0.634	0.63	0.97	-0.97
	142	0	74.27	54.04	0	0.7	0.65	A	0.598	0.571	0.861	-0.861
	143	0	74.96	55.1	0	0.69	1.06	M	0.552	0.607	1.362	-1.362
	144	0	75.6	55.1	0	0.65	0	S	0.533	0.616	0	0
	145	0	76.1	56.39	0	0.5	1.29	S	0.528	0.744	0.5	-0.5
	146	0	76.7	57.57	0	0.6	1.18	L	0.5	0.74	1.31	-1.31
	147	0	77.27	57.83	0	0.57	0.27	L	0.494	0.691	0.393	-0.393
	148	0	78.1	57.95	0	0.83	0.11	R	0.492	0.746	0	0
	149	0	78.59	58.58	0	0.49	0.64	V	0.464	0.877	0.857	-0.857
	150	0	79.29	58.58	0	0.7	0	P	0.481	0.859	0	0
	151	0	79.54	59.1	0	0.25	0.51	Q	0.486	0.893	0.673	-0.673
	152	0	79.78	60.11	0	0.24	1.01	L	0.495	0.842	1.01	-1.01
	153	0	80.28	61.26	0	0.5	1.15	L	0.471	0.741	1.16	-1.16
	154	0	80.88	62.54	0	0.6	1.28	L	0.486	0.626	1.488	-1.488
	155	0	81.1	63.78	0	0.22	1.25	E	0.493	0.558	1.235	-1.235
	156	0	81.65	64.47	0	0.54	0.69	I	0.541	0.503	0.673	-0.673
	157	0	82.19	65.29	0	0.55	0.82	F	0.557	0.541	0.853	-0.853
	158	0	82.75	66.71	0	0.55	1.42	L	0.574	0.484	1.714	-1.714
	159	0	83.4	67.17	0	0.66	0.46	E	0.578	0.428	0.5	-0.5
	160	0	84.16	67.51	0	0.75	0.34	G	0.585	0.488	0.5	-0.5
	161	0	84.5	67.51	0	0.34	0	H	0.558	0.454	0	0
	162	0	84.5	67.51	0	0	0	W	0.566	0.502	0	0
	163	0	85.15	67.51	0	0.65	0	G	0.591	0.574	0	0
	164	0	85.81	68.11	0	0.67	0.6	V	0.526	0.587	0.691	-0.691
	165	0	86.52	68.82	0	0.7	0.7	I	0.535	0.592	0.803	-0.803
	166	0	87.22	69.89	0	0.7	1.07	G	0.541	0.564	1.078	-1.078
	167	0	87.94	70.13	0	0.72	0.25	A	0.519	0.457	0.393	-0.393
	168	0	88.53	70.99	0	0.59	0.86	V	0.447	0.432	1.055	-1.055
	169	0	89.27	72.05	0	0.73	1.06	L	0.466	0.433	1.02	-1.02
	170	0	89.74	72.05	0	0.48	0	Y	0.441	0.327	0	0
	171	0	90.16	72.52	0	0.42	0.48	Y	0.429	0.327	0.637	-0.637
	172	0	90.41	73.25	0	0.25	0.72	S	0.434	0.366	0.803	-0.803
	173	0	90.41	73.38	0	0	0.13	M	0.483	0.394	0.245	-0.245
	174	0	91.17	74.03	0	0.76	0.65	V	0.538	0.407	0.853	-0.853
	175	0	91.93	74.45	0	0.76	0.42	A	0.558	0.361	0.58	-0.58
	176	0	92.41	74.45	0	0.48	0	N	0.502	0.404	0	0
	177	0	92.41	74.45	0	0	0	W	0.537	0.456	0	0
	178	0	93.19	75.32	0	0.78	0.87	A	0.562	0.456	0.58	-0.58
	179	0	93.66	75.32	0	0.48	0	K	0.544	0.369	0	0
	180	0	94.02	75.32	0	0.36	0	V	0.562	0.369	0	0
	181	0	94.5	76.19	0	0.47	0.87	L	0.593	0.382	0.882	-0.882
	182	0	95.24	77.19	0	0.74	1	A	0.568	0.346	1.205	-1.205
	183	0	95.79	77.45	0	0.55	0.26	V	0.57	0.28	0.393	-0.393
	184	0	96.75	77.64	0	0.96	0.19	L	0.572222222	0.282222222	0	0
	185	0	96.95	78.48	0	0.2	0.85	V	0.52375	0.29375	1.182	-1.182
	186	0	97.78	79.01	0	0.83	0.52	L	0.57	0.214285714	0.393	-0.393
	187	0	98.03	79.01	0	0.25	0	F	0.526666667	0.163333333	0	0
	188	0	98.63	79.01	0	0.6	0	A	0.582	0.196	0	0
	189	0	99.29	79.01	0	0.66	0	G	0.5775	0.245	0	0
	190	0	99.95	79.14	0	0.67	0.13	V	0.55	0.326666667	0.245	-0.245
	191	0	100.17	79.66	0	0.22	0.51	D	0.49	0.425	0.673	-0.673
	192	0	100.93	80	0	0.76	0.34	G	0.76	0.34	0.5	-0.5



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