HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	192						
#k	The	average	behavior	for	45	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hq
	1	0	0.44	1.31	0	0.44	1.31	V	0.377	0.373	1.03	-1.03
	2	0	0.64	1.84	0	0.2	0.53	N	0.38	0.262	0.673	-0.673
	3	0	1.18	1.84	0	0.53	0	Y	0.36	0.262	0	0
	4	0	1.74	2.08	0	0.57	0.23	R	0.343	0.262	0.325	-0.325
	5	0	2.28	2.08	0	0.53	0	N	0.339	0.239	0	0
	6	0	2.63	3.21	0	0.36	1.13	T	0.333	0.239	1.314	-1.314
	7	0	2.83	3.21	0	0.2	0	S	0.344	0.126	0	0
	8	0	3.3	3.21	0	0.47	0	G	0.36	0.126	0	0
	9	0	3.3	3.74	0	0	0.53	V	0.366	0.126	0.673	-0.673
	10	0	3.77	3.74	0	0.47	0	Y	0.444	0.093	0	0
	11	0	4.23	3.94	0	0.47	0.2	Y	0.433	0.093	0.325	-0.325
	12	0	4.23	4.48	0	0	0.53	V	0.396	0.103	0.673	-0.673
	13	0	4.59	4.48	0	0.36	0	T	0.458	0.05	0	0
	14	0	5.12	4.48	0	0.53	0	N	0.442	0.07	0	0
	15	0	5.59	4.48	0	0.47	0	D	0.445	0.07	0	0
	16	0	6.06	4.48	0	0.47	0	C	0.449	0.126	0	0
	17	0	6.41	4.48	0	0.36	0	P	0.42	0.179	0	0
	18	0	6.94	4.48	0	0.53	0	N	0.44	0.199	0	0
	19	0	7.72	4.68	0	0.78	0.2	S	0.407	0.199	0.325	-0.325
	20	0	8.08	4.68	0	0.36	0	S	0.349	0.179	0	0
	21	0	8.18	4.98	0	0.1	0.3	I	0.38	0.219	0.325	-0.325
	22	0	8.8	4.98	0	0.62	0	V	0.37	0.189	0	0
	23	0	9	5.18	0	0.2	0.2	Y	0.377	0.236	0.325	-0.325
	24	0	9.56	5.18	0	0.56	0	E	0.413	0.216	0	0
	25	0	10.07	5.73	0	0.51	0.56	A	0.419	0.216	0.693	-0.693
	26	0	10.24	6.27	0	0.18	0.53	D	0.388	0.16	0.673	-0.673
	27	0	10.8	6.47	0	0.56	0.2	H	0.452	0.107	0.325	-0.325
	28	0	11	6.47	0	0.2	0	H	0.449	0.087	0	0
	29	0	11.2	6.47	0	0.2	0	I	0.485	0.087	0	0
	30	0	11.87	6.87	0	0.67	0.4	L	0.465	0.087	0.5	-0.5
	31	0	11.87	6.87	0	0	0	H	0.478	0.093	0	0
	32	0	12.56	7.33	0	0.69	0.47	L	0.533	0.24	0	0
	33	0	13.11	7.33	0	0.56	0	P	0.464	0.213	0	0
	34	0	13.73	7.33	0	0.62	0	G	0.461	0.213	0	0
	35	0	13.93	7.33	0	0.2	0	C	0.43	0.324	0	0
	36	0	14.76	7.33	0	0.82	0	V	0.481	0.324	0	0
	37	0	15.29	7.33	0	0.53	0	P	0.466	0.442	0	0
	38	0	15.84	7.33	0	0.56	0	C	0.413	0.442	0	0
	39	0	15.84	7.33	0	0	0	V	0.357	0.442	0	0
	40	0	16.65	7.8	0	0.8	0.46	R	0.374	0.542	0.639	-0.639
	41	0	17.2	9.27	0	0.55	1.47	E	0.363	0.569	1.055	-1.055
	42	0	17.2	9.47	0	0	0.2	G	0.39	0.471	0.325	-0.325
	43	0	17.73	9.47	0	0.53	0	N	0.461	0.451	0	0
	44	0	18.04	10.59	0	0.31	1.11	Q	0.461	0.471	1.696	-1.696
	45	0	18.75	10.59	0	0.71	0	S	0.494	0.36	0	0
	46	0	19.41	11.76	0	0.67	1.18	R	0.483	0.38	1.089	-1.089
	47	0	19.41	11.76	0	0	0	C	0.476	0.262	0	0
	48	0	19.41	11.76	0	0	0	W	0.512	0.298	0	0
	49	0	19.59	12.77	0	0.17	1	V	0.549	0.355	0.802	-0.802
	50	0	20.28	13.5	0	0.69	0.73	A	0.588	0.322	1.089	-1.089
	51	0	21.1	13.99	0	0.82	0.49	L	0.568	0.393	0.5	-0.5
	52	0	21.81	13.99	0	0.71	0	T	0.533	0.444	0	0
	53	0	22.34	14.19	0	0.53	0.2	P	0.524	0.444	0.325	-0.325
	54	0	22.99	14.19	0	0.64	0	T	0.471	0.424	0	0
	55	0	23.59	14.39	0	0.6	0.2	V	0.427	0.444	0.325	-0.325
	56	0	24.19	14.39	0	0.6	0	A	0.367	0.424	0	0
	57	0	24.54	14.75	0	0.36	0.36	A	0.367	0.424	0.5	-0.5
	58	0	24.91	15.31	0	0.37	0.57	P	0.384	0.461	0.802	-0.802
	59	0	25.47	15.98	0	0.56	0.67	Y	0.451	0.411	0.802	-0.802
	60	0	25.95	17.42	0	0.49	1.44	I	0.466	0.4	1.505	-1.505
	61	0	26.42	18.42	0	0.47	1	G	0.47	0.256	0.898	-0.898
	62	0	27.04	18.42	0	0.62	0	A	0.443	0.156	0	0
	63	0	27.04	18.42	0	0	0	P	0.434	0.156	0	0
	64	0	27.24	18.62	0	0.2	0.2	L	0.516	0.156	0	0
	65	0	27.24	18.62	0	0	0	E	0.496	0.136	0	0
	66	0	27.84	18.62	0	0.6	0	S	0.534	0.136	0	0
	67	0	28.38	19.36	0	0.53	0.73	L	0.552	0.136	1.089	-1.089
	68	0	29.42	19.42	0	1.04	0.07	R	0.568	0.161	0	0
	69	0	30.13	19.98	0	0.71	0.56	S	0.528	0.154	0.611	-0.611
	70	0	30.67	19.98	0	0.53	0	H	0.493	0.098	0	0
	71	0	30.87	19.98	0	0.2	0	V	0.506	0.204	0	0
	72	0	31.4	19.98	0	0.53	0	D	0.539	0.204	0	0
	73	0	32.22	19.98	0	0.82	0	L	0.559	0.204	0	0
	74	0	32.22	19.98	0	0	0	M	0.515	0.224	0	0
	75	0	32.6	19.98	0	0.38	0	V	0.586	0.244	0	0
	76	0	33.38	19.98	0	0.78	0	G	0.584	0.244	0	0
	77	0	34.07	20.96	0	0.69	0.98	A	0.559	0.291	1.089	-1.089
	78	0	34.71	20.96	0	0.64	0	A	0.554	0.193	0	0
	79	0	35.07	20.96	0	0.36	0	T	0.537	0.193	0	0
	80	0	35.72	22.01	0	0.66	1.06	A	0.543	0.251	1.089	-1.089
	81	0	36.26	22.01	0	0.53	0	C	0.524	0.145	0	0
	82	0	36.99	22.01	0	0.73	0	S	0.54	0.145	0	0
	83	0	37.37	22.21	0	0.38	0.2	A	0.523	0.145	0.325	-0.325
	84	0	38.08	22.41	0	0.71	0.2	L	0.548	0.242	0.325	-0.325
	85	0	38.43	22.41	0	0.36	0	Y	0.497	0.222	0	0
	86	0	38.97	22.88	0	0.53	0.47	I	0.57	0.222	0.611	-0.611
	87	0	39.61	22.88	0	0.64	0	G	0.579	0.258	0	0
	88	0	40.08	22.88	0	0.47	0	D	0.588	0.258	0	0
	89	0	40.5	23.46	0	0.42	0.58	L	0.588	0.258	0.673	-0.673
	90	0	40.97	23.46	0	0.47	0	C	0.546	0.264	0	0
	91	0	41.66	23.46	0	0.69	0	G	0.546	0.315	0	0
	92	0	42.21	23.46	0	0.56	0	G	0.54	0.405	0	0
	93	0	42.84	24.63	0	0.63	1.17	L	0.531	0.425	1.055	-1.055
	94	0	43.04	24.63	0	0.2	0	F	0.522	0.367	0	0
	95	0	44.13	24.63	0	1.09	0	L	0.582	0.367	0	0
	96	0	44.75	25.45	0	0.62	0.83	A	0.546	0.367	0.95	-0.95
	97	0	45.48	25.45	0	0.73	0	G	0.504	0.304	0	0
	98	0	45.95	25.45	0	0.47	0	Q	0.431	0.304	0	0
	99	0	45.95	26.1	0	0	0.64	M	0.384	0.304	0.943	-0.943
	100	0	46.41	26.61	0	0.47	0.51	F	0.431	0.24	0.802	-0.802
	101	0	47.05	27.51	0	0.63	0.9	S	0.42	0.189	1.168	-1.168
	102	0	47.51	27.71	0	0.47	0.2	F	0.41	0.099	0.325	-0.325
	103	0	48.06	28.3	0	0.54	0.59	R	0.39	0.126	0.802	-0.802
	104	0	48.86	28.3	0	0.8	0	P	0.372	0.067	0	0
	105	0	49.59	28.3	0	0.73	0	R	0.328	0.067	0	0
	106	0	49.79	28.5	0	0.2	0.2	R	0.291	0.067	0.325	-0.325
	107	0	49.79	28.5	0	0	0	H	0.271	0.047	0	0
	108	0	49.79	28.5	0	0	0	W	0.271	0.047	0	0
	109	0	50.26	28.5	0	0.47	0	T	0.324	0.047	0	0
	110	0	50.61	28.5	0	0.36	0	T	0.341	0.083	0	0
	111	0	51.15	28.5	0	0.53	0	Q	0.387	0.083	0	0
	112	0	51.41	28.97	0	0.27	0.47	D	0.387	0.083	0.611	-0.611
	113	0	51.77	28.97	0	0.36	0	C	0.38	0.056	0	0
	114	0	52.12	28.97	0	0.36	0	N	0.422	0.076	0	0
	115	0	52.48	28.97	0	0.36	0	C	0.442	0.076	0	0
	116	0	52.48	28.97	0	0	0	S	0.426	0.076	0	0
	117	0	52.48	28.97	0	0	0	I	0.462	0.076	0	0
	118	0	53.01	28.97	0	0.53	0	Y	0.462	0.076	0	0
	119	0	53.66	29.32	0	0.64	0.36	T	0.482	0.076	0.5	-0.5
	120	0	54.48	29.32	0	0.82	0	G	0.418	0.04	0	0
	121	0	55.01	29.32	0	0.53	0	H	0.336	0.04	0	0
	122	0	55.21	29.52	0	0.2	0.2	I	0.283	0.04	0.325	-0.325
	123	0	55.99	29.72	0	0.78	0.2	T	0.263	0.02	0.325	-0.325
	124	0	56.55	29.72	0	0.56	0	G	0.185	0	0	0
	125	0	56.75	29.72	0	0.2	0	H	0.176	0.02	0	0
	126	0	57.1	29.72	0	0.36	0	R	0.156	0.02	0	0
	127	0	57.1	29.72	0	0	0	M	0.167	0.02	0	0
	128	0	57.83	29.72	0	0.73	0	A	0.24	0.02	0	0
	129	0	57.83	29.72	0	0	0	W	0.24	0.02	0	0
	130	0	57.83	29.72	0	0	0	D	0.306	0.078	0	0
	131	0	57.83	29.72	0	0	0	M	0.379	0.098	0	0
	132	0	57.83	29.72	0	0	0	M	0.45	0.098	0	0
	133	0	57.83	29.72	0	0	0	M	0.497	0.149	0	0
	134	0	58.3	29.92	0	0.47	0.2	S	0.551	0.179	0.325	-0.325
	135	0	58.3	29.92	0	0	0	W	0.54	0.232	0	0
	136	0	58.77	29.92	0	0.47	0	S	0.593	0.232	0	0
	137	0	59.5	29.92	0	0.73	0	P	0.593	0.305	0	0
	138	0	60.23	29.92	0	0.73	0	T	0.53	0.335	0	0
	139	0	60.9	30.5	0	0.66	0.58	T	0.497	0.335	0.802	-0.802
	140	0	61.63	30.7	0	0.73	0.2	T	0.451	0.313	0.325	-0.325
	141	0	62.34	30.7	0	0.71	0	L	0.431	0.313	0	0
	142	0	62.81	31.21	0	0.47	0.51	V	0.423	0.439	0.802	-0.802
	143	0	63.35	31.51	0	0.54	0.3	L	0.396	0.461	0.325	-0.325
	144	0	63.72	32.24	0	0.36	0.73	S	0.395	0.522	0.5	-0.5
	145	0	64.25	32.24	0	0.53	0	Q	0.432	0.505	0	0
	146	0	64.72	32.97	0	0.47	0.73	V	0.379	0.505	1.089	-1.089
	147	0	64.82	33.27	0	0.1	0.3	M	0.375	0.482	0.325	-0.325
	148	0	65.22	33.27	0	0.4	0	R	0.418	0.488	0	0
	149	0	65.42	33.63	0	0.2	0.36	I	0.456	0.526	0.5	-0.5
	150	0	65.95	33.83	0	0.53	0.2	S	0.505	0.49	0.325	-0.325
	151	0	66.58	35.09	0	0.63	1.26	S	0.472	0.47	1.28	-1.28
	152	0	66.78	35.82	0	0.2	0.73	T	0.445	0.344	0.898	-0.898
	153	0	67.31	36.73	0	0.53	0.91	L	0.425	0.271	1.221	-1.221
	154	0	68.05	37.29	0	0.73	0.56	V	0.423	0.18	0.802	-0.802
	155	0	68.05	37.29	0	0	0	D	0.403	0.171	0	0
	156	0	68.48	37.79	0	0.43	0.5	L	0.467	0.171	0.611	-0.611
	157	0	69.01	38.14	0	0.53	0.36	L	0.488	0.174	0.5	-0.5
	158	0	69.79	38.52	0	0.78	0.38	A	0.499	0.138	0.639	-0.639
	159	0	70.48	38.52	0	0.69	0	G	0.454	0.198	0	0
	160	0	70.68	38.52	0	0.2	0	G	0.463	0.198	0	0
	161	0	71.03	38.52	0	0.36	0	H	0.496	0.245	0	0
	162	0	71.03	38.52	0	0	0	W	0.46	0.245	0	0
	163	0	71.55	38.52	0	0.51	0	G	0.46	0.245	0	0
	164	0	72.08	38.99	0	0.53	0.47	V	0.409	0.245	0.611	-0.611
	165	0	72.72	38.99	0	0.64	0	L	0.409	0.198	0	0
	166	0	73.37	39.52	0	0.64	0.53	V	0.398	0.287	0.673	-0.673
	167	0	74.01	39.52	0	0.64	0	G	0.37	0.234	0	0
	168	0	74.35	40.5	0	0.33	0.98	V	0.306	0.234	1.314	-1.314
	169	0	75.12	40.5	0	0.78	0	A	0.293	0.136	0	0
	170	0	75.66	40.97	0	0.53	0.47	Y	0.268	0.136	0.611	-0.611
	171	0	75.66	40.97	0	0	0	F	0.284	0.109	0	0
	172	0	75.66	40.97	0	0	0	S	0.284	0.145	0	0
	173	0	75.66	40.97	0	0	0	M	0.337	0.145	0	0
	174	0	76.19	40.97	0	0.53	0	Q	0.373	0.165	0	0
	175	0	76.72	41.85	0	0.53	0.89	A	0.389	0.165	0.95	-0.95
	176	0	77.08	41.85	0	0.36	0	N	0.354	0.076	0	0
	177	0	77.08	41.85	0	0	0	W	0.318	0.076	0	0
	178	0	77.28	41.85	0	0.2	0	A	0.318	0.076	0	0
	179	0	77.81	41.85	0	0.53	0	K	0.325	0.076	0	0
	180	0	78.5	42.05	0	0.69	0.2	V	0.283	0.076	0.325	-0.325
	181	0	78.5	42.41	0	0	0.36	I	0.243	0.056	0.5	-0.5
	182	0	79.03	42.41	0	0.53	0	L	0.252	0.031	0	0
	183	0	79.39	42.61	0	0.36	0.2	V	0.223	0.042	0.325	-0.325
	184	0	80.08	42.61	0	0.69	0	L	0.207777778	0.024444444	0	0
	185	0.67	80.26	42.61	0.67	0.18	0	-	0.1475	0.0275	0.673	-0.673
	186	1.33	80.26	42.61	0.67	0	0	-	0.142857143	0.031428571	0.673	-0.673
	187	2	80.26	42.61	0.67	0	0	-	0.166666667	0.036666667	0.673	-0.673
	188	2.67	80.52	42.61	0.67	0.27	0	-	0.2	0.044	0.673	-0.673
	189	3.33	80.63	42.61	0.67	0.11	0	-	0.1825	0.055	0.673	-0.673
	190	4	80.92	42.61	0.67	0.29	0	-	0.206666667	0.073333333	0.673	-0.673
	191	4.67	81.01	42.72	0.67	0.09	0.11	-	0.165	0.11	0.943	-0.943
	192	5.33	81.26	42.83	0.67	0.24	0.11	-	0.24	0.11	0.943	-0.943



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