HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	193						
#k	The	average	behavior	for	190	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hb
	1	0	0.78	0.24	0	0.78	0.24	L	0.421	0.284	0.394	-0.394
	2	0	0.97	0.34	0	0.19	0.1	E	0.39	0.356	0.199	-0.199
	3	0	1.12	1.51	0	0.15	1.17	Y	0.428	0.373	0.856	-0.856
	4	0	1.74	1.74	0	0.62	0.23	R	0.413	0.256	0.199	-0.199
	5	0	2.18	1.74	0	0.44	0	N	0.37	0.233	0	0
	6	0	2.56	2.73	0	0.38	0.99	A	0.336	0.233	1.165	-1.165
	7	0	3.04	2.73	0	0.48	0	S	0.349	0.134	0	0
	8	0	3.39	2.83	0	0.35	0.11	G	0.357	0.19	0.199	-0.199
	9	0	3.73	2.83	0	0.34	0	L	0.375	0.179	0	0
	10	0	4.21	2.83	0	0.48	0	Y	0.369	0.251	0	0
	11	0	4.68	3.79	0	0.47	0.96	M	0.373	0.251	1.303	-1.303
	12	0	5.25	4.06	0	0.57	0.27	V	0.383	0.155	0.423	-0.423
	13	0	5.25	4.06	0	0	0	T	0.345	0.128	0	0
	14	0	5.44	4.06	0	0.19	0	N	0.364	0.128	0	0
	15	0	5.54	4.06	0	0.1	0	D	0.345	0.128	0	0
	16	0	6.05	4.06	0	0.51	0	C	0.363	0.128	0	0
	17	0	6.61	4.62	0	0.56	0.56	S	0.349	0.206	0.325	-0.325
	18	0	7.13	4.62	0	0.53	0	N	0.332	0.196	0	0
	19	0	7.41	5.34	0	0.28	0.72	S	0.345	0.208	0.871	-0.871
	20	0	7.94	5.34	0	0.52	0	S	0.374	0.136	0	0
	21	0	8.5	5.34	0	0.57	0	I	0.388	0.142	0	0
	22	0	8.69	5.34	0	0.19	0	V	0.341	0.142	0	0
	23	0	8.88	5.34	0	0.19	0	Y	0.356	0.257	0	0
	24	0	8.88	5.34	0	0	0	E	0.391	0.257	0	0
	25	0	9.17	5.34	0	0.28	0	A	0.449	0.257	0	0
	26	0	9.53	6.11	0	0.37	0.78	G	0.473	0.257	1.094	-1.094
	27	0	9.92	6.58	0	0.39	0.46	D	0.5	0.201	0.8	-0.8
	28	0	10.59	6.69	0	0.66	0.12	I	0.514	0.155	0.199	-0.199
	29	0	11.16	6.69	0	0.57	0	I	0.501	0.143	0	0
	30	0	11.82	6.76	0	0.66	0.06	L	0.503	0.163	0	0
	31	0	11.92	6.76	0	0.1	0	H	0.49	0.254	0	0
	32	0	12.26	7.9	0	0.34	1.15	L	0.48	0.254	1.106	-1.106
	33	0	12.8	7.9	0	0.54	0	P	0.482	0.275	0	0
	34	0	13.39	7.9	0	0.58	0	G	0.462	0.35	0	0
	35	0	13.91	7.9	0	0.52	0	C	0.457	0.35	0	0
	36	0	14.55	8.12	0	0.64	0.22	V	0.439	0.454	0.325	-0.325
	37	0	15.08	8.12	0	0.53	0	P	0.451	0.466	0	0
	38	0	15.6	8.12	0	0.53	0	C	0.434	0.574	0	0
	39	0	16.2	8.32	0	0.59	0.2	V	0.381	0.574	0.199	-0.199
	40	0	16.72	9.29	0	0.53	0.97	R	0.322	0.554	1.34	-1.34
	41	1	16.72	9.29	1	0	0	-	0.323	0.478	0.199	-0.199
	42	1	17.08	10.65	0	0.36	1.36	S	0.385	0.513	1.513	-1.513
	43	1	17.42	11.41	0	0.34	0.75	G	0.395	0.401	0.914	-0.914
	44	1	17.95	11.41	0	0.53	0	N	0.389	0.395	0	0
	45	1	18.29	12.45	0	0.34	1.04	T	0.393	0.405	1.228	-1.228
	46	1	19.05	12.79	0	0.76	0.34	S	0.418	0.301	0.5	-0.5
	47	1	19.41	13.87	0	0.36	1.08	K	0.392	0.267	1.498	-1.498
	48	1	19.41	13.87	0	0	0	C	0.423	0.159	0	0
	49	1	19.41	13.87	0	0	0	W	0.466	0.159	0	0
	50	1	19.95	14.07	0	0.54	0.21	T	0.495	0.235	0.325	-0.325
	51	1	20.57	14.43	0	0.62	0.35	S	0.468	0.302	0.613	-0.613
	52	1	21.03	14.66	0	0.46	0.24	V	0.463	0.368	0.394	-0.394
	53	1	21.31	15.36	0	0.28	0.69	S	0.485	0.344	0.791	-0.791
	54	1	21.88	15.46	0	0.57	0.1	P	0.52	0.309	0.199	-0.199
	55	1	22.47	15.46	0	0.59	0	T	0.491	0.345	0	0
	56	1	22.97	15.46	0	0.5	0	V	0.468	0.345	0	0
	57	1	23.64	15.46	0	0.67	0	A	0.491	0.345	0	0
	58	1	24.07	15.46	0	0.43	0	V	0.475	0.345	0	0
	59	1	24.36	16.22	0	0.29	0.76	S	0.489	0.373	0.938	-0.938
	60	1	24.63	17.09	0	0.27	0.88	H	0.496	0.297	1.139	-1.139
	61	1	25.21	18.11	0	0.57	1.01	P	0.504	0.3	1.168	-1.168
	62	1	25.88	18.11	0	0.68	0	G	0.481	0.199	0	0
	63	1	26.51	18.44	0	0.63	0.34	A	0.413	0.199	0.5	-0.5
	64	1	26.79	18.9	0	0.28	0.46	A	0.402	0.175	0.708	-0.708
	65	1	27.14	18.9	0	0.36	0	T	0.423	0.184	0	0
	66	1	27.88	18.9	0	0.73	0	A	0.459	0.227	0	0
	67	1	28.38	18.9	0	0.51	0	S	0.429	0.227	0	0
	68	1	28.95	19.18	0	0.57	0.28	L	0.428	0.237	0.518	-0.518
	69	1	29.31	19.18	0	0.36	0	R	0.416	0.259	0	0
	70	1	29.66	20.09	0	0.35	0.91	T	0.423	0.297	1.094	-1.094
	71	1	30	20.09	0	0.34	0	H	0.437	0.227	0	0
	72	1	30	20.09	0	0	0	V	0.439	0.286	0	0
	73	1	30.52	20.19	0	0.52	0.1	D	0.483	0.286	0.199	-0.199
	74	1	31.01	20.75	0	0.49	0.55	M	0.5	0.276	0.611	-0.611
	75	1	31.73	21.18	0	0.72	0.43	M	0.504	0.221	0.5	-0.5
	76	1	32.16	21.18	0	0.43	0	V	0.487	0.178	0	0
	77	1	32.66	21.28	0	0.5	0.1	G	0.483	0.178	0.199	-0.199
	78	1	33.11	21.77	0	0.45	0.5	A	0.504	0.168	0.708	-0.708
	79	1	33.54	22.15	0	0.43	0.38	A	0.529	0.131	0.588	-0.588
	80	1	34.03	22.36	0	0.49	0.21	T	0.534	0.093	0.199	-0.199
	81	1	34.4	22.95	0	0.36	0.59	L	0.525	0.18	0.673	-0.673
	82	1	34.84	22.95	0	0.44	0	C	0.54	0.14	0	0
	83	1	35.53	22.95	0	0.69	0	S	0.535	0.14	0	0
	84	1	36.06	22.95	0	0.53	0	A	0.525	0.16	0	0
	85	1	36.61	22.95	0	0.55	0	L	0.538	0.179	0	0
	86	1	37.01	22.95	0	0.39	0	Y	0.535	0.189	0	0
	87	1	37.72	22.95	0	0.71	0	V	0.563	0.198	0	0
	88	1	38.42	23.08	0	0.7	0.13	G	0.528	0.198	0.199	-0.199
	89	1	38.9	23.08	0	0.48	0	D	0.493	0.185	0	0
	90	1	39.3	24.17	0	0.4	1.08	L	0.479	0.185	1.257	-1.257
	91	1	39.8	24.36	0	0.51	0.19	C	0.506	0.096	0.325	-0.325
	92	1	40.2	24.36	0	0.39	0	G	0.465	0.077	0	0
	93	1	40.79	24.56	0	0.59	0.2	A	0.494	0.108	0.394	-0.394
	94	1	41.45	24.75	0	0.66	0.19	L	0.459	0.126	0.325	-0.325
	95	1	41.97	24.85	0	0.52	0.1	F	0.42	0.137	0.199	-0.199
	96	1	42.64	24.94	0	0.67	0.09	L	0.391	0.17	0	0
	97	1	43	24.94	0	0.36	0	V	0.387	0.161	0	0
	98	1	43.35	24.94	0	0.35	0	G	0.397	0.224	0	0
	99	1	43.68	24.94	0	0.34	0	Q	0.41	0.224	0	0
	100	1	44.35	25.13	0	0.67	0.19	G	0.42	0.368	0.325	-0.325
	101	1	44.45	25.13	0	0.1	0	F	0.428	0.349	0	0
	102	1	45.13	25.43	0	0.68	0.31	S	0.473	0.369	0.518	-0.518
	103	1	45.37	25.81	0	0.24	0.38	W	0.415	0.338	0.325	-0.325
	104	1	45.63	26.11	0	0.27	0.3	K	0.443	0.394	0.394	-0.394
	105	1	45.86	26.54	0	0.23	0.43	R	0.468	0.364	0.778	-0.778
	106	1	46.49	26.54	0	0.63	0	R	0.464	0.321	0	0
	107	1	46.94	27.17	0	0.46	0.63	Q	0.435	0.321	0.611	-0.611
	108	1	47.42	27.17	0	0.48	0	H	0.44	0.258	0	0
	109	1	47.86	28.61	0	0.44	1.44	W	0.443	0.321	1.677	-1.677
	110	1	48.62	28.61	0	0.75	0	T	0.409	0.177	0	0
	111	1	49.17	28.82	0	0.55	0.2	V	0.369	0.177	0.199	-0.199
	112	1	49.27	28.82	0	0.1	0	Q	0.368	0.157	0	0
	113	1	49.78	29.75	0	0.52	0.94	D	0.402	0.157	0.8	-0.8
	114	1	50.3	29.75	0	0.52	0	C	0.408	0.131	0	0
	115	1	50.49	29.75	0	0.19	0	N	0.356	0.17	0	0
	116	1	50.83	29.75	0	0.34	0	C	0.372	0.17	0	0
	117	1	51.34	29.75	0	0.51	0	S	0.356	0.18	0	0
	118	1	51.85	30.39	0	0.51	0.63	I	0.382	0.198	0.746	-0.746
	119	1	51.95	30.39	0	0.1	0	Y	0.331	0.135	0	0
	120	1	52.3	30.39	0	0.35	0	P	0.365	0.135	0	0
	121	1	52.84	30.39	0	0.54	0	G	0.33	0.135	0	0
	122	1	53.28	30.39	0	0.44	0	H	0.315	0.135	0	0
	123	1	53.86	31.06	0	0.58	0.68	L	0.271	0.135	0.95	-0.95
	124	1	53.86	31.46	0	0	0.39	T	0.213	0.067	0.562	-0.562
	125	1	54.22	31.46	0	0.35	0	G	0.213	0.048	0	0
	126	1	54.4	31.56	0	0.18	0.1	H	0.217	0.048	0.199	-0.199
	127	1	55.16	31.73	0	0.77	0.18	R	0.199	0.038	0.199	-0.199
	128	1	55.16	31.73	0	0	0	M	0.169	0.03	0	0
	129	1	55.6	31.73	0	0.44	0	A	0.23	0.03	0	0
	130	1	55.6	31.73	0	0	0	W	0.253	0.057	0	0
	131	1	55.99	31.73	0	0.39	0	D	0.299	0.143	0	0
	132	1	55.99	31.73	0	0	0	M	0.325	0.208	0	0
	133	1	55.99	31.73	0	0	0	M	0.353	0.271	0	0
	134	1	55.99	31.93	0	0	0.2	M	0.388	0.325	0.199	-0.199
	135	1	56.39	31.93	0	0.39	0	N	0.432	0.339	0	0
	136	1	56.39	31.93	0	0	0	W	0.441	0.39	0	0
	137	1	56.85	32.04	0	0.47	0.1	S	0.463	0.417	0.199	-0.199
	138	1	57.46	32.04	0	0.61	0	P	0.461	0.488	0	0
	139	1	58.13	32.3	0	0.67	0.27	A	0.438	0.518	0.423	-0.423
	140	1	58.59	33.17	0	0.46	0.86	A	0.43	0.491	1.278	-1.278
	141	1	59.24	33.81	0	0.65	0.65	T	0.426	0.458	0.708	-0.708
	142	1	59.52	34.45	0	0.28	0.63	L	0.389	0.393	0.693	-0.693
	143	1	59.87	34.98	0	0.35	0.54	V	0.405	0.33	0.731	-0.731
	144	1	60.31	35.32	0	0.44	0.34	V	0.418	0.296	0.518	-0.518
	145	1	60.79	35.83	0	0.48	0.51	S	0.41	0.372	0.673	-0.673
	146	1	61.01	36.1	0	0.22	0.27	Q	0.41	0.367	0.423	-0.423
	147	1	61.46	36.9	0	0.45	0.81	V	0.415	0.34	0.975	-0.975
	148	1	61.85	37.2	0	0.38	0.3	L	0.405	0.343	0.423	-0.423
	149	1	62.44	37.2	0	0.59	0	R	0.428	0.391	0	0
	150	1	62.86	37.74	0	0.42	0.53	L	0.438	0.461	0.708	-0.708
	151	1	63.14	37.74	0	0.28	0	P	0.439	0.408	0	0
	152	1	63.58	37.74	0	0.44	0	Q	0.466	0.427	0	0
	153	1	64.07	37.94	0	0.48	0.2	T	0.461	0.427	0.199	-0.199
	154	1	64.43	39.04	0	0.36	1.1	I	0.413	0.407	1.429	-1.429
	155	1	64.91	39.5	0	0.48	0.46	L	0.416	0.297	0.708	-0.708
	156	1	65.18	39.5	0	0.27	0	D	0.409	0.322	0	0
	157	1	65.53	40.34	0	0.35	0.84	L	0.389	0.389	1.094	-1.094
	158	1	66.13	41.13	0	0.61	0.78	V	0.425	0.305	1.305	-1.305
	159	1	66.82	41.83	0	0.69	0.7	I	0.418	0.227	0.914	-0.914
	160	1	67.26	41.83	0	0.43	0	G	0.432	0.182	0	0
	161	1	67.81	42.02	0	0.55	0.19	A	0.424	0.182	0.394	-0.394
	162	1	68.2	42.02	0	0.39	0	H	0.422	0.163	0	0
	163	1	68.2	42.02	0	0	0	W	0.427	0.207	0	0
	164	1	68.6	42.02	0	0.39	0	G	0.461	0.217	0	0
	165	1	69.01	42.73	0	0.41	0.71	V	0.422	0.227	0.693	-0.693
	166	1	69.07	43.4	0	0.07	0.67	M	0.425	0.156	0.845	-0.845
	167	1	69.78	43.4	0	0.71	0	A	0.445	0.119	0	0
	168	1	70.32	43.4	0	0.54	0	G	0.427	0.119	0	0
	169	1	71.15	43.65	0	0.83	0.25	V	0.373	0.119	0.325	-0.325
	170	1	71.51	43.65	0	0.35	0	A	0.337	0.094	0	0
	171	1	72.03	43.65	0	0.53	0	Y	0.336	0.094	0	0
	172	1	72.47	44.09	0	0.44	0.44	Y	0.319	0.094	0.611	-0.611
	173	1	72.81	44.19	0	0.34	0.1	S	0.332	0.174	0.199	-0.199
	174	1	72.81	44.29	0	0	0.1	M	0.325	0.207	0.199	-0.199
	175	1	73.25	44.29	0	0.44	0	Q	0.369	0.266	0	0
	176	1	73.53	44.59	0	0.27	0.3	G	0.359	0.34	0.394	-0.394
	177	1	74.05	44.59	0	0.53	0	N	0.384	0.397	0	0
	178	1	74.05	44.59	0	0	0	W	0.345	0.443	0	0
	179	1	74.52	44.59	0	0.47	0	A	0.397	0.443	0	0
	180	1	74.86	44.59	0	0.34	0	K	0.394	0.462	0	0
	181	1	75.21	44.59	0	0.36	0	V	0.404	0.462	0	0
	182	1	75.78	45.83	0	0.57	1.24	F	0.443	0.462	1.591	-1.591
	183	1	76.05	46.25	0	0.27	0.43	L	0.438	0.338	0.731	-0.731
	184	1	76.49	46.95	0	0.44	0.69	V	0.481	0.295	0.673	-0.673
	185	1	76.83	47.68	0	0.34	0.74	L	0.485555556	0.251111111	0.856	-0.856
	186	1	77.35	48.56	0	0.52	0.87	C	0.50375	0.19	0.938	-0.938
	187	1	77.49	49.02	0	0.14	0.46	L	0.501428571	0.092857143	0.5	-0.5
	188	1	78.02	49.02	0	0.52	0	F	0.561666667	0.031666667	0	0
	189	1	78.45	49.21	0	0.44	0.19	S	0.57	0.038	0.325	-0.325
	190	1	78.89	49.21	0	0.44	0	G	0.6025	0	0	0
	191	1	79.65	49.21	0	0.75	0	V	0.656666667	0	0	0
	192	1	80.17	49.21	0	0.52	0	D	0.61	0	0	0
	193	1	80.87	49.21	0	0.7	0	A	0.7	0	-1	



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