HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	193						
#k	The	average	behavior	for	276	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hq
	1	0	0.52	0.39	0	0.52	0.39	V	0.354	0.498	0.562	-0.562
	2	0	0.86	0.9	0	0.34	0.51	Q	0.309	0.606	0.679	-0.679
	3	0	1.47	1	0	0.61	0.1	V	0.334	0.615	0.173	-0.173
	4	0	1.63	1.65	0	0.16	0.64	A	0.327	0.605	0.837	-0.837
	5	0	1.71	1.73	0	0.08	0.08	N	0.357	0.541	0.173	-0.173
	6	0	1.8	2.4	0	0.08	0.67	R	0.401	0.533	0.965	-0.965
	7	0	2.27	2.48	0	0.47	0.08	S	0.427	0.466	0.173	-0.173
	8	0	2.73	3.99	0	0.46	1.51	G	0.443	0.485	1.834	-1.834
	9	0	3.16	5	0	0.43	1	S	0.443	0.334	0.836	-0.836
	10	0	3.55	5	0	0.39	0	Y	0.422	0.35	0	0
	11	0	3.61	6.47	0	0.07	1.47	M	0.391	0.35	0.662	-0.662
	12	0	4.2	7.07	0	0.59	0.6	V	0.423	0.203	0.837	-0.837
	13	0	4.74	7.07	0	0.54	0	T	0.405	0.195	0	0
	14	0	5.2	7.07	0	0.46	0	N	0.351	0.195	0	0
	15	0	5.73	7.07	0	0.52	0	D	0.348	0.195	0	0
	16	0	6.07	7.07	0	0.34	0	C	0.352	0.203	0	0
	17	0	6.7	7.33	0	0.63	0.27	S	0.368	0.347	0.514	-0.514
	18	0	7.16	7.33	0	0.46	0	N	0.343	0.429	0	0
	19	0	7.38	8.5	0	0.22	1.16	S	0.36	0.437	1.339	-1.339
	20	0	7.46	8.5	0	0.08	0	S	0.404	0.321	0	0
	21	0	7.85	8.5	0	0.39	0	I	0.426	0.321	0	0
	22	0	8.26	9.02	0	0.41	0.52	V	0.426	0.321	0.544	-0.544
	23	0	8.26	9.02	0	0	0	W	0.434	0.349	0	0
	24	0	8.69	9.02	0	0.43	0	Q	0.477	0.349	0	0
	25	0	9.25	9.1	0	0.56	0.08	L	0.49	0.349	0.173	-0.173
	26	0	9.75	10.54	0	0.5	1.44	E	0.485	0.341	1.339	-1.339
	27	0	10.13	11.63	0	0.38	1.09	G	0.458	0.213	1.34	-1.34
	28	0	10.75	11.71	0	0.63	0.08	A	0.486	0.104	0.173	-0.173
	29	0	11.42	11.71	0	0.66	0	V	0.475	0.096	0	0
	30	0	11.72	11.71	0	0.3	0	L	0.425	0.096	0	0
	31	0	12.11	11.71	0	0.39	0	H	0.418	0.218	0	0
	32	0	12.6	12.51	0	0.49	0.8	V	0.417	0.354	1.127	-1.127
	33	0	13.03	12.51	0	0.43	0	P	0.413	0.396	0	0
	34	0	13.59	12.51	0	0.56	0	G	0.37	0.396	0	0
	35	0	14.1	12.51	0	0.51	0	C	0.357	0.487	0	0
	36	0	14.33	12.67	0	0.23	0.16	I	0.367	0.543	0.287	-0.287
	37	0	14.99	12.67	0	0.66	0	P	0.419	0.596	0	0
	38	0	15.51	12.67	0	0.52	0	C	0.41	0.617	0	0
	39	0	15.67	12.67	0	0.16	0	E	0.381	0.617	0	0
	40	0	15.9	13.89	0	0.23	1.22	W	0.365	0.617	1.671	-1.671
	41	0	16.28	15.25	0	0.38	1.36	N	0.358	0.519	1.545	-1.545
	42	0	16.73	16.46	0	0.45	1.22	G	0.372	0.44	1.259	-1.259
	43	1	16.73	16.46	1	0	0	-	0.395	0.318	0.173	-0.173
	44	1	17.17	17.38	0	0.43	0.91	N	0.432	0.375	0.815	-0.815
	45	1	17.77	17.93	0	0.61	0.56	A	0.452	0.292	0.895	-0.895
	46	1	18.52	18.62	0	0.75	0.69	S	0.443	0.236	0.662	-0.662
	47	1	19.09	18.83	0	0.57	0.21	R	0.394	0.195	0.287	-0.287
	48	1	19.32	18.83	0	0.23	0	C	0.383	0.174	0	0
	49	1	19.32	18.83	0	0	0	W	0.391	0.207	0	0
	50	1	19.47	19.07	0	0.16	0.24	I	0.451	0.309	0.287	-0.287
	51	1	19.99	19.64	0	0.52	0.57	P	0.458	0.36	0.815	-0.815
	52	1	20.67	19.64	0	0.68	0	V	0.455	0.355	0	0
	53	1	21.04	20.21	0	0.37	0.57	T	0.432	0.355	0.888	-0.888
	54	1	21.67	20.29	0	0.63	0.08	S	0.469	0.298	0.173	-0.173
	55	1	22.19	20.29	0	0.52	0	N	0.44	0.29	0	0
	56	1	22.44	20.57	0	0.26	0.28	I	0.454	0.29	0.514	-0.514
	57	1	22.91	20.57	0	0.46	0	A	0.455	0.359	0	0
	58	1	23.22	20.9	0	0.31	0.33	V	0.425	0.459	0.377	-0.377
	59	1	23.82	21.92	0	0.6	1.02	N	0.454	0.426	1.362	-1.362
	60	1	24.05	22.67	0	0.23	0.75	Q	0.446	0.324	1.118	-1.118
	61	1	24.54	23.19	0	0.49	0.52	P	0.48	0.305	0.69	-0.69
	62	1	24.99	23.19	0	0.45	0	G	0.477	0.253	0	0
	63	1	25.73	23.19	0	0.74	0	A	0.466	0.296	0	0
	64	1	26.07	23.19	0	0.34	0	L	0.438	0.304	0	0
	65	1	26.74	23.19	0	0.66	0	T	0.415	0.376	0	0
	66	1	27	24.16	0	0.27	0.97	R	0.402	0.429	1.293	-1.293
	67	1	27.16	25.16	0	0.16	1	G	0.429	0.332	0.815	-0.815
	68	1	27.77	25.16	0	0.6	0	L	0.413	0.264	0	0
	69	1	28.28	25.16	0	0.52	0	R	0.412	0.313	0	0
	70	1	28.85	25.72	0	0.57	0.56	A	0.412	0.313	0.792	-0.792
	71	1	29.31	25.72	0	0.46	0	H	0.363	0.257	0	0
	72	1	29.65	26.16	0	0.34	0.43	I	0.317	0.32	0.792	-0.792
	73	1	30.12	26.24	0	0.46	0.08	D	0.306	0.277	0.173	-0.173
	74	1	30.22	26.96	0	0.11	0.72	I	0.322	0.269	1.133	-1.133
	75	1	30.75	27.49	0	0.53	0.53	I	0.366	0.197	0.679	-0.679
	76	1	31.29	27.49	0	0.54	0	V	0.387	0.189	0	0
	77	1	31.29	27.81	0	0	0.32	A	0.382	0.189	0.514	-0.514
	78	1	31.89	28.3	0	0.59	0.49	S	0.394	0.169	0.662	-0.662
	79	1	32.41	28.3	0	0.52	0	A	0.389	0.12	0	0
	80	1	32.49	28.3	0	0.08	0	T	0.376	0.12	0	0
	81	1	32.49	28.93	0	0	0.63	F	0.426	0.194	1.054	-1.054
	82	1	32.72	28.93	0	0.23	0	C	0.472	0.131	0	0
	83	1	33.34	28.93	0	0.62	0	S	0.515	0.131	0	0
	84	1	33.89	28.93	0	0.55	0	A	0.502	0.182	0	0
	85	1	34.63	29.38	0	0.74	0.45	M	0.452	0.231	0.173	-0.173
	86	1	35.12	29.38	0	0.49	0	Y	0.378	0.186	0	0
	87	1	35.24	29.51	0	0.12	0.12	V	0.38	0.24	0.173	-0.173
	88	1	35.78	29.51	0	0.54	0	G	0.433	0.267	0	0
	89	1	36.17	29.51	0	0.39	0	D	0.444	0.318	0	0
	90	1	36.75	30.24	0	0.58	0.74	V	0.421	0.318	1.185	-1.185
	91	1	37.22	30.24	0	0.46	0	C	0.415	0.366	0	0
	92	1	37.87	30.24	0	0.66	0	G	0.392	0.417	0	0
	93	1	38.36	30.75	0	0.49	0.51	A	0.39	0.448	0.679	-0.679
	94	1	38.41	31.24	0	0.05	0.49	L	0.398	0.448	0.873	-0.873
	95	1	38.41	31.24	0	0	0	M	0.401	0.399	0	0
	96	1	38.92	31.78	0	0.51	0.54	I	0.457	0.407	0.69	-0.69
	97	1	39.57	32.18	0	0.65	0.39	A	0.457	0.446	0.562	-0.562
	98	1	40.22	32.68	0	0.65	0.51	S	0.402	0.481	0.679	-0.679
	99	1	40.38	32.68	0	0.16	0	Q	0.36	0.43	0	0
	100	1	40.9	33.91	0	0.52	1.22	A	0.362	0.602	1.054	-1.054
	101	1	41.13	34.42	0	0.23	0.51	F	0.353	0.48	0.815	-0.815
	102	1	41.77	34.73	0	0.64	0.31	I	0.381	0.532	0.624	-0.624
	103	1	42.34	35.24	0	0.57	0.51	I	0.369	0.509	0.662	-0.662
	104	1	42.42	35.24	0	0.08	0	S	0.345	0.501	0	0
	105	1	42.99	35.32	0	0.56	0.08	P	0.353	0.501	0.173	-0.173
	106	1	43.5	36.26	0	0.51	0.93	R	0.349	0.493	1.105	-1.105
	107	1	43.6	36.99	0	0.1	0.74	Y	0.35	0.4	0.976	-0.976
	108	1	43.82	36.99	0	0.23	0	H	0.356	0.326	0	0
	109	1	44	38.71	0	0.18	1.72	Q	0.362	0.334	1.664	-1.664
	110	1	44.43	38.71	0	0.43	0	F	0.359	0.162	0	0
	111	1	44.94	39.74	0	0.51	1.03	V	0.368	0.226	0.662	-0.662
	112	1	45.46	39.83	0	0.52	0.08	Q	0.366	0.123	0.173	-0.173
	113	1	45.78	40.25	0	0.33	0.43	D	0.366	0.237	0.616	-0.616
	114	1	45.94	40.25	0	0.16	0	C	0.341	0.21	0	0
	115	1	46.47	40.25	0	0.52	0	N	0.389	0.218	0	0
	116	1	46.99	40.25	0	0.52	0	C	0.405	0.218	0	0
	117	1	47.15	40.25	0	0.16	0	S	0.367	0.241	0	0
	118	1	47.43	40.34	0	0.29	0.08	I	0.406	0.241	0.173	-0.173
	119	1	47.59	40.34	0	0.15	0	Y	0.377	0.241	0	0
	120	1	48.11	40.97	0	0.52	0.64	P	0.404	0.241	0.662	-0.662
	121	1	48.6	40.97	0	0.49	0	G	0.352	0.177	0	0
	122	1	49.12	42.2	0	0.52	1.22	H	0.332	0.177	1.263	-1.263
	123	1	49.2	42.36	0	0.08	0.16	I	0.28	0.055	0.345	-0.345
	124	1	49.84	42.44	0	0.64	0.08	P	0.272	0.039	0.345	-0.345
	125	1	50.52	42.44	0	0.68	0	G	0.235	0.097	0	0
	126	1	50.65	42.67	0	0.14	0.23	H	0.19	0.097	0.377	-0.377
	127	1	51.21	42.67	0	0.55	0	R	0.176	0.074	0	0
	128	1	51.21	42.75	0	0	0.08	M	0.181	0.082	0.173	-0.173
	129	1	51.63	42.75	0	0.42	0	A	0.246	0.074	0	0
	130	1	51.63	42.75	0	0	0	W	0.275	0.082	0	0
	131	1	51.92	42.75	0	0.29	0	D	0.332	0.201	0	0
	132	1	51.92	42.75	0	0	0	M	0.326	0.209	0	0
	133	1	51.92	42.75	0	0	0	M	0.327	0.233	0	0
	134	1	52.19	43.41	0	0.27	0.66	M	0.335	0.265	0.662	-0.662
	135	1	52.42	43.41	0	0.23	0	N	0.369	0.245	0	0
	136	1	52.42	43.41	0	0	0	W	0.405	0.245	0	0
	137	1	53.02	43.49	0	0.6	0.08	S	0.439	0.245	0.173	-0.173
	138	1	53.67	43.49	0	0.65	0	P	0.438	0.328	0	0
	139	1	54.38	43.57	0	0.71	0.08	T	0.411	0.443	0.173	-0.173
	140	1	54.95	44.76	0	0.57	1.19	A	0.395	0.435	1.195	-1.195
	141	1	55.18	44.85	0	0.23	0.08	T	0.383	0.352	0.173	-0.173
	142	1	55.18	45.09	0	0.01	0.24	M	0.418	0.344	0.456	-0.456
	143	1	55.27	45.41	0	0.08	0.32	I	0.446	0.32	0.456	-0.456
	144	1	55.87	45.87	0	0.61	0.46	M	0.501	0.345	0.544	-0.544
	145	1	56.47	45.87	0	0.59	0	A	0.47	0.371	0	0
	146	1	56.81	45.87	0	0.34	0	Y	0.473	0.44	0	0
	147	1	57.4	46.78	0	0.59	0.91	L	0.457	0.5	1.072	-1.072
	148	1	57.78	47.93	0	0.38	1.15	M	0.449	0.452	0.907	-0.907
	149	1	58.34	47.93	0	0.55	0	R	0.45	0.393	0	0
	150	1	58.79	48.29	0	0.45	0.36	V	0.427	0.533	0.512	-0.512
	151	1	59.37	48.29	0	0.58	0	P	0.45	0.507	0	0
	152	1	59.66	48.29	0	0.29	0	E	0.455	0.575	0	0
	153	1	60.29	48.86	0	0.63	0.57	V	0.478	0.575	0.815	-0.815
	154	1	60.59	49.59	0	0.3	0.72	V	0.415	0.518	1.062	-1.062
	155	1	61.22	50.28	0	0.62	0.69	L	0.43	0.446	0.829	-0.829
	156	1	61.4	50.88	0	0.18	0.6	E	0.434	0.377	0.829	-0.829
	157	1	61.9	51.31	0	0.51	0.43	I	0.422	0.38	0.604	-0.604
	158	1	62.29	51.87	0	0.39	0.56	I	0.42	0.337	0.815	-0.815
	159	1	62.61	53.27	0	0.32	1.4	A	0.381	0.281	1.48	-1.48
	160	1	63.29	53.37	0	0.68	0.1	G	0.438	0.147	0.173	-0.173
	161	1	63.92	54.04	0	0.63	0.68	A	0.386	0.137	0.837	-0.837
	162	1	64.44	54.04	0	0.52	0	H	0.372	0.069	0	0
	163	1	64.44	54.04	0	0	0	W	0.328	0.069	0	0
	164	1	64.89	54.04	0	0.45	0	G	0.374	0.084	0	0
	165	1	65.55	54.04	0	0.66	0	V	0.329	0.084	0	0
	166	1	65.61	54.67	0	0.06	0.63	M	0.292	0.084	0.918	-0.918
	167	1	66.1	54.67	0	0.49	0	F	0.302	0.021	0	0
	168	1	66.1	54.67	0	0	0	G	0.261	0.029	0	0
	169	1	66.99	54.73	0	0.89	0.06	L	0.261	0.029	0	0
	170	1	67.15	54.73	0	0.16	0	A	0.235	0.023	0	0
	171	1	67.63	54.73	0	0.49	0	Y	0.271	0.023	0	0
	172	1	67.72	54.73	0	0.08	0	F	0.222	0.023	0	0
	173	1	68.17	54.89	0	0.46	0.15	S	0.248	0.087	0.287	-0.287
	174	1	68.17	54.89	0	0	0	M	0.225	0.121	0	0
	175	1	68.46	54.89	0	0.29	0	Q	0.248	0.121	0	0
	176	1	68.62	54.89	0	0.16	0	G	0.271	0.121	0	0
	177	1	68.71	54.97	0	0.08	0.08	A	0.331	0.127	0.173	-0.173
	178	1	68.71	54.97	0	0	0	W	0.396	0.132	0	0
	179	1	69.33	54.97	0	0.63	0	A	0.44	0.221	0	0
	180	1	69.86	54.97	0	0.52	0	K	0.448	0.237	0	0
	181	1	69.86	54.97	0	0	0	V	0.448	0.237	0	0
	182	1	70.2	55.61	0	0.34	0.64	V	0.456	0.237	0.965	-0.965
	183	1	70.43	56.1	0	0.23	0.49	V	0.46	0.196	0.662	-0.662
	184	1	70.66	56.1	0	0.23	0	I	0.489	0.147	0	0
	185	1	71.17	56.1	0	0.52	0	L	0.517777778	0.163333333	0	0
	186	1	71.94	56.15	0	0.76	0.06	L	0.5175	0.18375	0	0
	187	1	72.67	56.29	0	0.73	0.13	L	0.482857143	0.201428571	0	0
	188	1	73.11	57.18	0	0.44	0.89	T	0.441666667	0.213333333	1.082	-1.082
	189	1	73.82	57.34	0	0.71	0.16	A	0.442	0.078	0.287	-0.287
	190	1	74.34	57.34	0	0.52	0	G	0.375	0.0575	0	0
	191	1	74.42	57.34	0	0.08	0	V	0.326666667	0.076666667	0	0
	192	1	74.81	57.56	0	0.38	0.23	E	0.45	0.115	0.377	-0.377
	193	1	75.33	57.56	0	0.52	0	A	0.52	0	0	0



Questions or comments? Contact us at hcv-info@lanl.gov