HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	191						
#k	The	average	behavior	for	10	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hq
	1	0	0	0	0	0	0	M	0	0	0	0
	2	0	0	0	0	0	0	S	0	0	0	0
	3	0	0	0	0	0	0	T	0	0	0	0
	4	0	0	0	0	0	0	N	0	0	0	0
	5	0	0	0	0	0	0	P	0	0	0	0
	6	0	0	0	0	0	0	K	0	0	0	0
	7	0	0	0	0	0	0	P	0	0	0	0
	8	0	0	0	0	0	0	Q	0.04	0	0	0
	9	0	0	0	0	0	0	R	0.04	0	0	0
	10	0	0	0	0	0	0	K	0.04	0	0	0
	11	0	0	0	0	0	0	T	0.04	0	0	0
	12	0	0	0	0	0	0	K	0.04	0	0	0
	13	0	0	0	0	0	0	R	0.04	0	0	0
	14	0	0	0	0	0	0	N	0.04	0	0	0
	15	0	0	0	0	0	0	T	0.04	0	0	0
	16	0	0	0	0	0	0	N	0.04	0	0	0
	17	0	0.4	0	0	0.4	0	R	0.04	0	0	0
	18	0	0.4	0	0	0	0	R	0	0	0	0
	19	0	0.4	0	0	0	0	P	0	0	0	0
	20	0	0.4	0	0	0	0	Q	0	0	0	0
	21	0	0.4	0	0	0	0	D	0	0	0	0
	22	0	0.4	0	0	0	0	V	0	0	0	0
	23	0	0.4	0	0	0	0	K	0.04	0	0	0
	24	0	0.4	0	0	0	0	F	0.04	0	0	0
	25	0	0.4	0	0	0	0	P	0.04	0	0	0
	26	0	0.4	0	0	0	0	G	0.04	0	0	0
	27	0	0.4	0	0	0	0	G	0.04	0	0	0
	28	0	0.4	0	0	0	0	G	0.04	0	0	0
	29	0	0.4	0	0	0	0	Q	0.04	0	0	0
	30	0	0.4	0	0	0	0	I	0.04	0	0	0
	31	0	0.4	0	0	0	0	V	0.04	0	0	0
	32	0	0.8	0	0	0.4	0	G	0.04	0	0	0
	33	0	0.8	0	0	0	0	G	0	0	0	0
	34	0	0.8	0	0	0	0	V	0.04	0.04	0	0
	35	0	0.8	0	0	0	0	Y	0.04	0.08	0	0
	36	0	0.8	0	0	0	0	L	0.04	0.08	0	0
	37	0	0.8	0	0	0	0	L	0.04	0.08	0	0
	38	0	0.8	0	0	0	0	P	0.04	0.08	0	0
	39	0	0.8	0	0	0	0	R	0.08	0.08	0	0
	40	0	0.8	0	0	0	0	R	0.08	0.08	0	0
	41	0	0.8	0	0	0	0	G	0.08	0.08	0	0
	42	0	0.8	0	0	0	0	P	0.08	0.08	0	0
	43	0	1.2	0.4	0	0.4	0.4	R	0.08	0.12	0.5	-0.5
	44	0	1.2	0.8	0	0	0.4	L	0.1	0.08	0.5	-0.5
	45	0	1.2	0.8	0	0	0	G	0.1	0.04	0	0
	46	0	1.2	0.8	0	0	0	V	0.1	0.04	0	0
	47	0	1.2	0.8	0	0	0	R	0.1	0.04	0	0
	48	0	1.6	0.8	0	0.4	0	A	0.1	0.04	0	0
	49	0	1.6	0.8	0	0	0	T	0.06	0.04	0	0
	50	0	1.6	0.8	0	0	0	R	0.1	0.04	0	0
	51	0	1.6	0.8	0	0	0	K	0.14	0.04	0	0
	52	0	1.6	1.2	0	0	0.4	T	0.14	0.04	0.5	-0.5
	53	0	2.2	1.2	0	0.6	0	S	0.18	0	0	0
	54	0	2.2	1.2	0	0	0	E	0.12	0	0	0
	55	0	2.2	1.2	0	0	0	R	0.12	0	0	0
	56	0	2.2	1.2	0	0	0	S	0.16	0	0	0
	57	0	2.2	1.2	0	0	0	Q	0.16	0	0	0
	58	0	2.2	1.2	0	0	0	P	0.16	0	0	0
	59	0	2.6	1.2	0	0.4	0	R	0.16	0	0	0
	60	0	3	1.2	0	0.4	0	G	0.12	0	0	0
	61	0	3	1.2	0	0	0	R	0.14	0.04	0	0
	62	0	3.4	1.2	0	0.4	0	R	0.14	0.08	0	0
	63	0	3.4	1.2	0	0	0	Q	0.1	0.12	0	0
	64	0	3.4	1.2	0	0	0	P	0.1	0.12	0	0
	65	0	3.8	1.2	0	0.4	0	I	0.1	0.12	0	0
	66	0	3.8	1.2	0	0	0	P	0.06	0.12	0	0
	67	0	3.8	1.2	0	0	0	K	0.06	0.12	0	0
	68	0	3.8	1.2	0	0	0	A	0.06	0.12	0	0
	69	0	3.8	1.2	0	0	0	R	0.06	0.12	0	0
	70	0	4.4	1.6	0	0.6	0.4	Q	0.06	0.12	0.5	-0.5
	71	0	4.4	2	0	0	0.4	P	0	0.08	0.5	-0.5
	72	0	4.4	2.4	0	0	0.4	T	0	0.04	0.5	-0.5
	73	0	4.4	2.4	0	0	0	G	0	0	0	0
	74	0	4.4	2.4	0	0	0	R	0	0	0	0
	75	0	4.4	2.4	0	0	0	S	0	0	0	0
	76	0	4.4	2.4	0	0	0	W	0	0.04	0	0
	77	0	4.4	2.4	0	0	0	G	0.06	0.04	0	0
	78	0	4.4	2.4	0	0	0	Q	0.06	0.08	0	0
	79	0	4.4	2.4	0	0	0	P	0.06	0.08	0	0
	80	0	4.4	2.4	0	0	0	G	0.1	0.08	0	0
	81	0	4.4	2.4	0	0	0	Y	0.1	0.08	0	0
	82	0	4.4	2.4	0	0	0	P	0.1	0.08	0	0
	83	0	4.4	2.4	0	0	0	W	0.14	0.08	0	0
	84	0	4.4	2.4	0	0	0	P	0.14	0.08	0	0
	85	0	4.4	2.8	0	0	0.4	F	0.14	0.08	0.5	-0.5
	86	0	5	2.8	0	0.6	0	Y	0.14	0.04	0	0
	87	0	5	3.2	0	0	0.4	A	0.08	0.04	0.5	-0.5
	88	0	5	3.2	0	0	0	N	0.14	0	0	0
	89	0	5.4	3.2	0	0.4	0	E	0.14	0	0	0
	90	0	5.4	3.2	0	0	0	G	0.1	0	0	0
	91	0	5.4	3.2	0	0	0	L	0.16	0	0	0
	92	0	5.8	3.2	0	0.4	0	G	0.2	0	0	0
	93	0	5.8	3.2	0	0	0	W	0.2	0.04	0	0
	94	0	5.8	3.2	0	0	0	A	0.2	0.04	0	0
	95	0	5.8	3.2	0	0	0	G	0.2	0.04	0	0
	96	0	5.8	3.2	0	0	0	W	0.2	0.04	0	0
	97	0	6.4	3.2	0	0.6	0	L	0.24	0.08	0	0
	98	0	6.4	3.2	0	0	0	L	0.18	0.08	0	0
	99	0	6.4	3.2	0	0	0	S	0.18	0.08	0	0
	100	0	7	3.2	0	0.6	0	P	0.18	0.08	0	0
	101	0	7.4	3.2	0	0.4	0	R	0.12	0.08	0	0
	102	0	7.8	3.6	0	0.4	0.4	G	0.08	0.08	0.5	-0.5
	103	0	7.8	3.6	0	0	0	S	0.04	0.04	0	0
	104	0	7.8	3.6	0	0	0	R	0.04	0.04	0	0
	105	0	7.8	3.6	0	0	0	P	0.1	0.04	0	0
	106	0	8.2	4	0	0.4	0.4	N	0.14	0.08	0.5	-0.5
	107	0	8.2	4	0	0	0	W	0.17	0.04	0	0
	108	0	8.2	4	0	0	0	G	0.23	0.08	0	0
	109	0	8.2	4	0	0	0	P	0.27	0.08	0	0
	110	0	8.2	4	0	0	0	N	0.27	0.08	0	0
	111	0	8.2	4	0	0	0	D	0.31	0.08	0	0
	112	0	8.2	4	0	0	0	P	0.31	0.12	0	0
	113	0	8.2	4	0	0	0	R	0.31	0.12	0	0
	114	0	8.8	4	0	0.6	0	R	0.31	0.12	0	0
	115	0	9.2	4.4	0	0.4	0.4	R	0.25	0.16	0.5	-0.5
	116	0	9.9	4.4	0	0.7	0	S	0.21	0.12	0	0
	117	0	10.5	4.8	0	0.6	0.4	R	0.18	0.12	0.5	-0.5
	118	0	10.9	4.8	0	0.4	0	N	0.12	0.08	0	0
	119	0	10.9	4.8	0	0	0	L	0.08	0.08	0	0
	120	0	11.3	4.8	0	0.4	0	G	0.08	0.08	0	0
	121	0	11.3	5.2	0	0	0.4	K	0.04	0.08	0.5	-0.5
	122	0	11.3	5.2	0	0	0	V	0.04	0.08	0	0
	123	0	11.3	5.2	0	0	0	I	0.08	0.12	0	0
	124	0	11.3	5.6	0	0	0.4	D	0.08	0.12	0.5	-0.5
	125	0	11.3	5.6	0	0	0	T	0.08	0.08	0	0
	126	0	11.7	5.6	0	0.4	0	L	0.08	0.08	0	0
	127	0	11.7	5.6	0	0	0	T	0.1	0.08	0	0
	128	0	11.7	5.6	0	0	0	C	0.1	0.08	0	0
	129	0	11.7	5.6	0	0	0	G	0.1	0.08	0	0
	130	0	11.7	5.6	0	0	0	F	0.1	0.08	0	0
	131	0	11.7	6	0	0	0.4	A	0.1	0.08	0.5	-0.5
	132	0	12.1	6.4	0	0.4	0.4	D	0.1	0.04	0.5	-0.5
	133	0	12.1	6.4	0	0	0	L	0.06	0	0	0
	134	0	12.1	6.4	0	0	0	M	0.06	0	0	0
	135	0	12.1	6.4	0	0	0	G	0.1	0.04	0	0
	136	0	12.7	6.4	0	0.6	0	Y	0.1	0.04	0	0
	137	0	12.7	6.4	0	0	0	I	0.04	0.04	0	0
	138	0	12.7	6.4	0	0	0	P	0.04	0.04	0	0
	139	0	12.7	6.4	0	0	0	L	0.04	0.08	0	0
	140	0	12.7	6.4	0	0	0	V	0.04	0.08	0	0
	141	0	12.7	6.4	0	0	0	G	0.08	0.08	0	0
	142	0	12.7	6.4	0	0	0	G	0.08	0.08	0	0
	143	0	12.7	6.4	0	0	0	P	0.12	0.08	0	0
	144	0	13.1	6.8	0	0.4	0.4	V	0.16	0.08	0.5	-0.5
	145	0	13.1	6.8	0	0	0	G	0.12	0.04	0	0
	146	0	13.1	6.8	0	0	0	G	0.12	0.04	0	0
	147	0	13.1	6.8	0	0	0	V	0.16	0.08	0	0
	148	0	13.1	7.2	0	0	0.4	A	0.22	0.12	0.5	-0.5
	149	0	13.1	7.2	0	0	0	R	0.22	0.08	0	0
	150	0	13.5	7.2	0	0.4	0	A	0.26	0.08	0	0
	151	0	13.5	7.2	0	0	0	L	0.22	0.08	0	0
	152	0	13.9	7.2	0	0.4	0	A	0.22	0.08	0	0
	153	0	14.3	7.2	0	0.4	0	H	0.18	0.12	0	0
	154	0	14.3	7.2	0	0	0	G	0.18	0.12	0	0
	155	0	14.3	7.2	0	0	0	V	0.18	0.12	0	0
	156	0	14.7	7.6	0	0.4	0.4	R	0.22	0.12	0.5	-0.5
	157	0	15.3	8	0	0.6	0.4	A	0.18	0.08	0.5	-0.5
	158	0	15.3	8	0	0	0	L	0.12	0.04	0	0
	159	0	15.7	8	0	0.4	0	E	0.12	0.04	0	0
	160	0	15.7	8	0	0	0	D	0.18	0.07	0	0
	161	0	15.7	8	0	0	0	G	0.18	0.07	0	0
	162	0	15.7	8.4	0	0	0.4	V	0.18	0.07	0.5	-0.5
	163	0	16.1	8.4	0	0.4	0	N	0.18	0.03	0	0
	164	0	16.1	8.4	0	0	0	Y	0.14	0.07	0	0
	165	0	16.5	8.4	0	0.4	0	A	0.14	0.07	0	0
	166	0	16.5	8.4	0	0	0	T	0.14	0.07	0	0
	167	0	16.5	8.4	0	0	0	G	0.14	0.07	0	0
	168	0	16.5	8.4	0	0	0	N	0.18	0.07	0	0
	169	0	17.5	8.7	0	1	0.3	L	0.22	0.14	0	0
	170	0	17.5	8.7	0	0	0	P	0.12	0.11	0	0
	171	0	17.5	8.7	0	0	0	G	0.16	0.11	0	0
	172	0	17.5	8.7	0	0	0	C	0.16	0.11	0	0
	173	0	17.5	9.1	0	0	0.4	S	0.22	0.11	0.5	-0.5
	174	0	17.5	9.1	0	0	0	F	0.255	0.115	0	0
	175	0	17.9	9.1	0	0.4	0	S	0.295	0.115	0	0
	176	0	17.9	9.1	0	0	0	I	0.315	0.115	0	0
	177	0	18.3	9.1	0	0.4	0	F	0.375	0.115	0	0
	178	0	18.7	9.8	0	0.4	0.7	I	0.375	0.115	0.95	-0.95
	179	0	18.7	9.8	0	0	0	L	0.375	0.045	0	0
	180	0	19.1	9.8	0	0.4	0	A	0.415	0.085	0	0
	181	0	19.1	9.8	0	0	0	L	0.415	0.125	0	0
	182	0	19.7	9.8	0	0.6	0	L	0.455	0.125	0	0
	183	0	20.05	10.25	0	0.35	0.45	S	0.438888889	0.138888889	0.5	-0.5
	184	0	20.45	10.25	0	0.4	0	C	0.45	0.1	0	0
	185	0	21.05	10.25	0	0.6	0	L	0.457142857	0.114285714	0	0
	186	0	21.65	10.25	0	0.6	0	T	0.433333333	0.133333333	0	0
	187	0	22.05	10.25	0	0.4	0	V	0.4	0.16	0	0
	188	0	22.45	10.25	0	0.4	0	P	0.4	0.2	0	0
	189	0	22.85	10.65	0	0.4	0.4	A	0.4	0.266666667	0.5	-0.5
	190	0	23.25	11.05	0	0.4	0.4	T	0.4	0.2	0.5	-0.5
	191	0	23.65	11.05	0	0.4	0	A	0.4	0	0	0



Questions or comments? Contact us at hcv-info@lanl.gov