HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


#k	codon	indel-tally	syn-tally	nonsyn-tally								
#k	The	number	of	codons	is:	191						
#k	The	average	behavior	for	45	comparisons:						
#k	Cumulative	Per	Codon									
#k	__________________	__________________										
#k	codon	indel	syn	nonsyn	indel	syn	nonsyn	aa	avg syn 10	avg nonsyn 10	entropy	Hb
	1	0	0	0	0	0	0	M	0	0	0	0
	2	0	0	0	0	0	0	S	0	0	0	0
	3	0	0	0	0	0	0	T	0	0	0	0
	4	0	0	0	0	0	0	N	0	0	0	0
	5	0	0	0	0	0	0	P	0.036	0.02	0	0
	6	0	0	0	0	0	0	K	0.036	0.02	0	0
	7	0	0	0	0	0	0	P	0.036	0.02	0	0
	8	0	0	0	0	0	0	Q	0.036	0.02	0	0
	9	0	0	0	0	0	0	R	0.036	0.02	0	0
	10	0	0	0	0	0	0	K	0.036	0.02	0	0
	11	0	0	0	0	0	0	T	0.036	0.02	0	0
	12	0	0	0	0	0	0	K	0.036	0.02	0	0
	13	0	0	0	0	0	0	R	0.092	0.02	0	0
	14	0	0.36	0.2	0	0.36	0.2	N	0.092	0.02	0	0
	15	0	0.36	0.2	0	0	0	T	0.056	0	0	0
	16	0	0.36	0.2	0	0	0	N	0.056	0	0	0
	17	0	0.36	0.2	0	0	0	R	0.056	0	0	0
	18	0	0.36	0.2	0	0	0	R	0.056	0	0	0
	19	0	0.36	0.2	0	0	0	P	0.103	0	0	0
	20	0	0.36	0.2	0	0	0	Q	0.103	0	0	0
	21	0	0.36	0.2	0	0	0	D	0.103	0	0	0
	22	0	0.91	0.2	0	0.56	0	V	0.103	0	0	0
	23	0	0.91	0.2	0	0	0	K	0.047	0	0	0
	24	0	0.91	0.2	0	0	0	F	0.047	0	0	0
	25	0	0.91	0.2	0	0	0	P	0.047	0	0	0
	26	0	0.91	0.2	0	0	0	G	0.047	0	0	0
	27	0	0.91	0.2	0	0	0	G	0.047	0	0	0
	28	0	1.38	0.2	0	0.47	0	G	0.047	0	0	0
	29	0	1.38	0.2	0	0	0	Q	0	0	0	0
	30	0	1.38	0.2	0	0	0	I	0	0	0	0
	31	0	1.38	0.2	0	0	0	V	0	0	0	0
	32	0	1.38	0.2	0	0	0	G	0	0	0	0
	33	0	1.38	0.2	0	0	0	G	0.02	0	0	0
	34	0	1.38	0.2	0	0	0	V	0.02	0	0	0
	35	0	1.38	0.2	0	0	0	Y	0.02	0	0	0
	36	0	1.38	0.2	0	0	0	L	0.02	0	0	0
	37	0	1.38	0.2	0	0	0	L	0.02	0	0	0
	38	0	1.38	0.2	0	0	0	P	0.02	0	0	0
	39	0	1.38	0.2	0	0	0	R	0.02	0.02	0	0
	40	0	1.38	0.2	0	0	0	R	0.02	0.02	0	0
	41	0	1.38	0.2	0	0	0	G	0.02	0.02	0	0
	42	0	1.58	0.2	0	0.2	0	P	0.02	0.02	0	0
	43	0	1.58	0.2	0	0	0	R	0	0.04	0	0
	44	0	1.58	0.2	0	0	0	L	0.036	0.04	0	0
	45	0	1.58	0.2	0	0	0	G	0.036	0.04	0	0
	46	0	1.58	0.2	0	0	0	V	0.036	0.04	0	0
	47	0	1.58	0.2	0	0	0	R	0.036	0.04	0	0
	48	0	1.58	0.4	0	0	0.2	A	0.036	0.04	0	0
	49	0	1.58	0.4	0	0	0	T	0.056	0.02	1.011	-1.011
	50	0	1.58	0.4	0	0	0	R	0.056	0.02	0	0
	51	0	1.58	0.4	0	0	0	K	0.092	0.02	0	0
	52	0	1.58	0.6	0	0	0.2	T	0.148	0.02	0	0
	53	0	1.93	0.6	0	0.36	0	S	0.148	0	0	0
	54	0	1.93	0.6	0	0	0	E	0.112	0	0	0
	55	0	1.93	0.6	0	0	0	R	0.112	0	0	0
	56	0	1.93	0.6	0	0	0	S	0.112	0	0	0
	57	0	1.93	0.6	0	0	0	Q	0.112	0.02	0	0
	58	0	2.13	0.6	0	0.2	0	P	0.112	0.04	0	0
	59	0	2.13	0.6	0	0	0	R	0.092	0.04	0	0
	60	0	2.49	0.6	0	0.36	0	G	0.092	0.04	0	0
	61	0	3.04	0.6	0	0.56	0	R	0.056	0.04	0	0
	62	0	3.04	0.6	0	0	0	R	0	0.04	0	0
	63	0	3.04	0.6	0	0	0	Q	0	0.04	0	0
	64	0	3.04	0.6	0	0	0	P	0	0.04	0	0
	65	0	3.04	0.6	0	0	0	I	0	0.04	0	0
	66	0	3.04	0.8	0	0	0.2	P	0	0.06	0	0
	67	0	3.04	1	0	0	0.2	K	0	0.04	0	0
	68	0	3.04	1	0	0	0	D	0	0.02	0	0
	69	0	3.04	1	0	0	0	R	0.036	0.02	0	0
	70	0	3.04	1	0	0	0	R	0.072	0.02	0	0
	71	0	3.04	1	0	0	0	S	0.072	0.02	0.637	-0.637
	72	0	3.04	1	0	0	0	T	0.072	0.02	0	0
	73	0	3.04	1	0	0	0	G	0.072	0.02	0	0
	74	0	3.04	1	0	0	0	K	0.072	0.02	0	0
	75	0	3.04	1.2	0	0	0.2	S	0.125	0.02	0	0
	76	0	3.04	1.2	0	0	0	W	0.145	0	0	0
	77	0	3.04	1.2	0	0	0	G	0.198	0	0	0
	78	0	3.4	1.2	0	0.36	0	K	0.198	0	0.451	-0.451
	79	0	3.76	1.2	0	0.36	0	P	0.162	0	0	0
	80	0	3.76	1.2	0	0	0	G	0.126	0	0	0
	81	0	3.76	1.2	0	0	0	Y	0.179	0	0	0
	82	0	3.76	1.2	0	0	0	P	0.179	0	0	0
	83	0	3.76	1.2	0	0	0	W	0.226	0	0	0
	84	0	4.29	1.2	0	0.53	0	P	0.226	0	0	0
	85	0	4.49	1.2	0	0.2	0	L	0.193	0	0	0
	86	0	5.02	1.2	0	0.53	0	Y	0.173	0	0	0
	87	0	5.02	1.2	0	0	0	G	0.12	0	0.451	-0.451
	88	0	5.02	1.2	0	0	0	N	0.12	0	0	0
	89	0	5.02	1.2	0	0	0	E	0.12	0	0	0
	90	0	5.56	1.2	0	0.53	0	G	0.12	0	0	0
	91	0	5.56	1.2	0	0	0	C	0.087	0	0	0
	92	0	6.02	1.2	0	0.47	0	G	0.087	0	0	0
	93	0	6.02	1.2	0	0	0	W	0.04	0	0	0
	94	0	6.22	1.2	0	0.2	0	A	0.04	0	0	0
	95	0	6.22	1.2	0	0	0	G	0.02	0.036	0	0
	96	0	6.22	1.2	0	0	0	W	0.02	0.036	0	0
	97	0	6.22	1.2	0	0	0	L	0.02	0.103	0	0
	98	0	6.22	1.2	0	0	0	L	0.02	0.103	0	0
	99	0	6.22	1.2	0	0	0	S	0.02	0.103	0	0
	100	0	6.42	1.2	0	0.2	0	P	0.02	0.103	0	0
	101	0	6.42	1.2	0	0	0	R	0.053	0.123	0	0
	102	0	6.42	1.2	0	0	0	G	0.053	0.123	0	0
	103	0	6.42	1.2	0	0	0	S	0.053	0.123	0	0
	104	0	6.42	1.56	0	0	0.36	R	0.053	0.123	0	0
	105	0	6.42	1.56	0	0	0	P	0.089	0.087	0	0
	106	0	6.42	2.22	0	0	0.67	T	0.089	0.107	0	0
	107	0	6.42	2.22	0	0	0	W	0.089	0.04	0	0
	108	0	6.42	2.22	0	0	0	G	0.136	0.04	0	0
	109	0	6.42	2.22	0	0	0	P	0.156	0.04	0	0
	110	0	6.96	2.42	0	0.53	0.2	T	0.156	0.04	0.451	-0.451
	111	0	6.96	2.42	0	0	0	D	0.123	0.02	0	0
	112	0	6.96	2.42	0	0	0	P	0.17	0.073	0	0
	113	0	6.96	2.42	0	0	0	R	0.17	0.073	0	0
	114	0	7.31	2.42	0	0.36	0	H	0.17	0.073	0	0
	115	0	7.31	2.62	0	0	0.2	R	0.19	0.073	0.637	-0.637
	116	0	7.31	2.62	0	0	0	S	0.19	0.053	0	0
	117	0	7.78	2.62	0	0.47	0	R	0.21	0.073	0	0
	118	0	7.98	2.62	0	0.2	0	N	0.183	0.073	0	0
	119	0	7.98	2.62	0	0	0	L	0.163	0.073	0	0
	120	0	8.18	2.62	0	0.2	0	G	0.163	0.093	0	0
	121	0	8.64	3.16	0	0.47	0.53	R	0.143	0.113	0	0
	122	0	8.64	3.16	0	0	0	V	0.096	0.06	0	0
	123	0	8.64	3.16	0	0	0	I	0.116	0.06	0	0
	124	0	9.2	3.16	0	0.56	0	D	0.116	0.06	0	0
	125	0	9.2	3.16	0	0	0	T	0.06	0.06	0	0
	126	0	9.4	3.36	0	0.2	0.2	I	0.06	0.06	0	0
	127	0	9.6	3.36	0	0.2	0	T	0.06	0.04	0	0
	128	0	9.6	3.36	0	0	0	C	0.04	0.04	0	0
	129	0	9.6	3.56	0	0	0.2	G	0.04	0.04	0	0
	130	0	9.6	3.76	0	0	0.2	F	0.04	0.02	0	0
	131	0	9.6	3.76	0	0	0	A	0.06	0.02	0	0
	132	0	9.8	3.76	0	0.2	0	D	0.06	0.02	0	0
	133	0	9.8	3.76	0	0	0	L	0.06	0.02	0	0
	134	0	9.8	3.76	0	0	0	M	0.096	0.02	0	0
	135	0	9.8	3.76	0	0	0	G	0.149	0.02	0	0
	136	0	10	3.76	0	0.2	0	Y	0.149	0.02	0	0
	137	0	10	3.76	0	0	0	I	0.129	0.02	0	0
	138	0	10	3.76	0	0	0	P	0.129	0.02	0	0
	139	0	10	3.76	0	0	0	V	0.129	0.02	0	0
	140	0	10.2	3.96	0	0.2	0.2	V	0.129	0.02	0	0
	141	0	10.2	3.96	0	0	0	G	0.109	0	0	0
	142	0	10.4	3.96	0	0.2	0	A	0.109	0	0	0
	143	0	10.76	3.96	0	0.36	0	P	0.089	0	0	0
	144	0	11.29	3.96	0	0.53	0	V	0.073	0	0	0
	145	0	11.29	3.96	0	0	0	G	0.02	0	0	0
	146	0	11.29	3.96	0	0	0	G	0.02	0	0	0
	147	0	11.29	3.96	0	0	0	V	0.067	0	0	0
	148	0	11.29	3.96	0	0	0	A	0.067	0	0	0
	149	0	11.29	3.96	0	0	0	R	0.067	0	0	0
	150	0	11.29	3.96	0	0	0	A	0.114	0	0	0
	151	0	11.29	3.96	0	0	0	L	0.114	0	0	0
	152	0	11.29	3.96	0	0	0	A	0.114	0	0	0
	153	0	11.49	3.96	0	0.2	0	H	0.114	0.02	0	0
	154	0	11.49	3.96	0	0	0	G	0.114	0.02	0	0
	155	0	11.49	3.96	0	0	0	V	0.167	0.02	0	0
	156	0	11.96	3.96	0	0.47	0	R	0.167	0.02	0	0
	157	0	11.96	3.96	0	0	0	V	0.14	0.02	0	0
	158	0	11.96	3.96	0	0	0	L	0.14	0.04	0	0
	159	0	12.42	3.96	0	0.47	0	E	0.14	0.04	0	0
	160	0	12.42	3.96	0	0	0	D	0.202	0.04	0	0
	161	0	12.42	3.96	0	0	0	G	0.255	0.04	0	0
	162	0	12.42	4.16	0	0	0.2	I	0.255	0.04	0	0
	163	0	12.62	4.16	0	0.2	0	N	0.255	0.02	0	0
	164	0	13.16	4.16	0	0.53	0	Y	0.271	0.02	0.451	-0.451
	165	0	13.16	4.16	0	0	0	A	0.238	0.02	0	0
	166	0	13.36	4.16	0	0.2	0	T	0.238	0.02	0	0
	167	0	13.36	4.36	0	0	0.2	G	0.218	0.02	0	0
	168	0	13.36	4.36	0	0	0	N	0.238	0	0	0
	169	0	14.44	4.36	0	1.09	0	L	0.285	0	0	0
	170	0	14.98	4.36	0	0.53	0	P	0.176	0	0	0
	171	0	14.98	4.36	0	0	0	G	0.159	0	0	0
	172	0	14.98	4.36	0	0	0	C	0.179	0	0	0
	173	0	15.33	4.36	0	0.36	0	S	0.199	0	0	0
	174	0	15.53	4.36	0	0.2	0	F	0.219	0	0	0
	175	0	15.53	4.36	0	0	0	S	0.199	0	0	0
	176	0	15.53	4.36	0	0	0	I	0.219	0.116	0	0
	177	0	15.73	4.36	0	0.2	0	F	0.239	0.116	0	0
	178	0	16.2	4.36	0	0.47	0	L	0.219	0.116	0	0
	179	0	16.2	4.36	0	0	0	L	0.192	0.116	0.451	-0.451
	180	0	16.56	4.36	0	0.36	0	A	0.192	0.116	0	0
	181	0	16.76	4.36	0	0.2	0	L	0.156	0.116	0	0
	182	0	16.96	4.36	0	0.2	0	L	0.183	0.136	0	0
	183	0	17.51	4.36	0	0.56	0	S	0.181111111	0.151111111	0	0
	184	0	17.51	4.36	0	0	0	C	0.13375	0.17	0	0
	185	0	17.71	5.51	0	0.2	1.16	F	0.152857143	0.194285714	0	0
	186	0	17.91	5.51	0	0.2	0	T	0.145	0.033333333	0	0
	187	0	17.91	5.51	0	0	0	V	0.134	0.04	0	0
	188	0	18.11	5.51	0	0.2	0	P	0.1675	0.05	0	0
	189	0	18.11	5.51	0	0	0	V	0.156666667	0.066666667	0	0
	190	0	18.11	5.51	0	0	0	S	0.235	0.1	0	0
	191	0	18.58	5.71	0	0.47	0.2	A	0.47	0.2	0.451	-0.451



Questions or comments? Contact us at hcv-info@lanl.gov