HCV Database
HCV sequence database
 



To our users Please note that the HCV database site is no longer funded. We try to keep the database updated and the tools running, but unfortunately, we cannot guarantee we can provide help for using this site. Data won't be manually curated either.


Murphy primers:

DM51, sense primer, positions 71-95, 5'-GAA AGC GTC TAG CCA TGG CGT TAG T-3'

DM50, anti-sense primer, positions 292-311, 5'-CTC GCA AGC ACC CTA TCA GG-3'

Ray core/E1 primers:

Outer:

493S_H77 (493), 5'-GCA ACA GGG AAC CTT CCT GGT TGC TC-3'

987R_H77 (987), 5'-CGT AGG GGA CCA GTT CAT CAT CAT-3'

Inner:

502S_H77 (502), 5'-AAC CTT CCT GGT TGC TCT TTC TCT AT-3'

975R_H77 (975), 5'-GTT CAT CAT CAT ATC CCA TGC CAT-3'

Viazov/Ross primers:

SV542as - GGA GGG GCG GAA TAC CTG GTC ATR GCY TCC GTR AA

SV360s - CTT CTC ATA TGA CAC CCG CTG YTT YGA

SV361s - CTT CTC ATA TGA CAC CCG WTG CTT YGA

SV362s - CAT ATG ACA CCC GCT GYT TYG ACT C

SV363s - CAT ATG ACA CCC GWT GCT TYG AYT C

Enomoto primers:

5- TGG GGA TCC CGT ATG ATA CCC GCT GCT TTG A-3 (S-primer)

5- GGC GGA ATT CCT GGT CAT AGC CTC CGT GAA -3 (AS-primer)




Questions or comments? Contact us at hcv-info@lanl.gov